SWU01498, SWU01498 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSWU01498
Genbank IDN/A
TypeSSR
SpeciesGossypium barbadense
Repeat Motif(TCA)3
Primer 1SWU01498_F: CCAGATGGAGTACATTGATAAC
Primer 2SWU01498_R: GCTGCTTGAAGGAAGATTAG
Product Length118
Publication[view all]
Commentmarker sequence confirmed
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:5838582..5838699 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A10chromosomeA10:6338309..6338426 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:5487445..5487562 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018211.1chromosomeCM018211.1:6152117..6152234 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:56979685..56979801 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_10chromosomeKI_10:42801734..42801851 -Gossypioides kirkii genome ISU_v3n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:123139178..123139295 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016623.1chromosomeCM016623.1:8071609..8071726 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr11chromosomeDt_chr11:60322810..60322927 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:5398859..5398976 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:5695690..5695807 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:5987700..5987817 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:6080284..6080401 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:5622021..5622138 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:6133442..6133559 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:5798587..5798704 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:5598183..5598300 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:5855757..5855874 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:6413581..6413698 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:5589770..5589887 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:6239974..6240091 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:5656263..5656380 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:6128983..6129100 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:5591834..5591951 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:6196592..6196709 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:5791393..5791510 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:6517467..6517584 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:5714142..5714259 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:6272251..6272368 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:5824281..5824398 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:6467916..6468033 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:5840234..5840351 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:6229590..6229707 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:5417919..5418036 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:90679274..90679391 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:5405385..5405502 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:5272808..5272925 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:4477963..4478080 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:5613137..5613254 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:4719758..4719875 +Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:4021638..4021753 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:5048645..5048875 +Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:106729115..106729232 -Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:5520140..5520257 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:160141448..160141565 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>SWU01498 ID=SWU01498; Name=SWU01498; organism=Gossypium barbadense; type=genetic_marker; length=118bp
CCAGATGGAGTACATTGATAACATCATCACATCAATACCCTCATCTTCAT
CATCATCGTCCTTATCGGCATTATCCAGCGGGCAGTATTTGACAAACCCT
AATCTTCCTTCAAGCAGC