SWU01480, SWU01480 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSWU01480
Genbank IDN/A
TypeSSR
SpeciesGossypium barbadense
Repeat Motif(AAG)3
Primer 1SWU01480_F: CATCTACCTGGAAGGACTG
Primer 2SWU01480_R: ATGAACATCAGCGAACGA
Product Length114
Publication[view all]
Commentmarker sequence confirmed
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:5837935..5838048 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A10chromosomeA10:6337662..6337775 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018211.1chromosomeCM018211.1:6151470..6151583 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:56980335..56980448 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_10chromosomeKI_10:42802385..42802498 -Gossypioides kirkii genome ISU_v3n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:123139829..123139942 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:58663106..58663219 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:8070962..8071075 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr11chromosomeDt_chr11:60323461..60323574 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:5398212..5398325 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:5695043..5695156 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:5987053..5987166 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:6079637..6079750 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:5621374..5621487 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:6132795..6132908 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:5797940..5798053 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:5597536..5597649 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:5855110..5855223 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:6412934..6413047 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A10chromosomeGbar_A10:6239327..6239440 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:6128336..6128449 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:5591187..5591300 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:6195945..6196058 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:5790746..5790859 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:6516820..6516933 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:5713495..5713608 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:6271604..6271717 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:5823634..5823747 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:6467269..6467382 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:5839587..5839700 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:6228943..6229056 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:5417272..5417385 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:90678627..90678740 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:5404738..5404851 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:5272013..5272126 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:4477188..4477301 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:5612490..5612603 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:4719111..4719224 +Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:4020991..4021104 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:5047998..5048111 +Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:106729766..106729879 -Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:5519493..5519606 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:160142099..160142212 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>SWU01480 ID=SWU01480; Name=SWU01480; organism=Gossypium barbadense; type=genetic_marker; length=114bp
CATCTACCTGGAAGGACTGATAATGAAGTGAAGAATTTTTGGAATTCAAG
TATCAAGAAGAAGCTAATCTCCCATGATCATGTCCCAGCTTTGGCTTCGT
TCGCTGATGTTCAT