SWU01471, SWU01471 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSWU01471
Genbank IDN/A
TypeSSR
SpeciesGossypium barbadense
Repeat Motif(TGGT)4,(TGG)3,(TG)3,(CAG)3,(ATG)3
Primer 1SWU01471_F: AATTCCAGGCGACAGAGG
Primer 2SWU01471_R: CGAATTCATGTGGTTAGATCC
Product Length141
Publication[view all]
Commentmarker sequence confirmed
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:10596115..10596252 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A11chromosomeA11:11175571..11175708 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:9813868..9814005 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:11019903..11020040 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:56190973..56191110 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_11chromosomeKI_11:7957165..7957302 +Gossypioides kirkii genome ISU_v3n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:113036950..113037087 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:9706832..9706969 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr7chromosomeDt_chr7:9112784..9112921 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr13chromosomeAt_chr13:17970725..17970862 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:10412719..10412856 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:10758903..10759040 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:10255742..10255879 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:11360469..11360606 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:10091886..10092023 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:10957347..10957484 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:10333140..10333277 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:11035629..11035766 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:10224592..10224729 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:11412076..11412213 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:10048222..10048359 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:10905617..10905754 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:10029698..10029835 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:11050725..11050862 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:10012424..10012561 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:11214177..11214314 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:10305053..10305190 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:11325239..11325376 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:10060156..10060293 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:11255539..11255676 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:10490534..10490671 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:11550620..11550757 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:11568071..11568208 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:11277230..11277367 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:53678939..53679076 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:10896602..10896739 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:9726492..9726629 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:8515257..8515394 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:8896967..8897104 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:10048263..10048400 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:7958876..7959013 +Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:7082632..7082769 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:8111202..8111339 +Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:12117582..12117719 +Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:9631152..9631289 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:171333019..171333155 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>SWU01471 ID=SWU01471; Name=SWU01471; organism=Gossypium barbadense; type=genetic_marker; length=141bp
AATTCCAGGCGACAGAGGAGCATAGCAATGGTTGGTTGGTTGGTGGTGGG
GAGTCATCGATGGACACTGTGTGGAATGAAGAGAATGTTTGGTTTTTACA
GCAGCAGCTTCATGATGATGGGATCTAACCACATGAATTCG