SWU01442, SWU01442 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSWU01442
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
Repeat Motif(CTG)3
Primer 1SWU01442_F: AAGTTCAATGCTTCTTCTGC
Primer 2SWU01442_R: CGTAACACTCTGGTTCTCA
Product Length131
Publication[view all]
Commentmarker sequence confirmed
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:1457035..1457165 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A02chromosomeA02:1132363..1132494 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:1205587..1205717 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018203.1chromosomeCM018203.1:1293393..1293524 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:61813830..61813960 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_03chromosomeKI_03:1024628..1024758 +Gossypioides kirkii genome ISU_v3n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:1115114..1115244 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016616.1chromosomeCM016616.1:152367602..152367732 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold2234.1supercontigscaffold2234.1:216295..216425 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold171.1supercontigscaffold171.1:925163..925294 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:1384613..1384743 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A02chromosomeA02:1055511..1055642 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:1417636..1417766 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A02chromosomeGhir_A02:1186566..1186697 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:1296426..1296556 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:1137512..1137643 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:1417177..1417307 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:1127491..1127622 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:1258819..1258949 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A02chromosomeA02:1118699..1118830 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:1375147..1375277 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A02chromosomeGbar_A02:1036757..1036888 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:1227137..1227267 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A02chromosomeA02:1069901..1070032 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:1348492..1348622 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017611.1chromosomeCM017611.1:1007592..1007723 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:1490380..1490510 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017637.1chromosomeCM017637.1:1165335..1165465 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:1062462..1062592 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017689.1chromosomeCM017689.1:1029697..1029828 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:1455941..1456071 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A02chromosomeA02:1179202..1179333 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:131410990..131411120 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:129761987..129762117 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr03chromosomeChr03:1215335..1215465 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_03chromosomeB_03:105926623..105926753 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:1269606..1269736 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr05chromosomechr05:1171825..1171955 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr05chromosomeChr05:1491943..1492073 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:1213320..1213450 +Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:959077..959207 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr05chromosomeChr05:1150501..1150631 +Gossypium lobatum (D7) genome ISU_v1n/a
E03chromosomeE03:1770416..1770546 +Gossypium stocksii (E1) genome NSF_v1n/a
F03chromosomeF03:1179360..1179490 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr03chromosomeChr03:204127456..204127586 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>SWU01442 ID=SWU01442; Name=SWU01442; organism=Gossypium hirsutum; type=genetic_marker; length=132bp
AAGTTCAATGCTTCTTCTGCAXCATCGACTTTTCAGGTTGGTGAGTCGTC
AGCCCCCGCCGCTGCTCCGGCGACTGCCCAGGTGCCTGCTGCTGCATGGA
CTGGGATGAATGGTGAGAACCAGAGTGTTACG