SWU01200, SWU01200 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSWU01200
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
Repeat Motif(CTT)3
Primer 1SWU01200_F: AGTGGCTCTAGCTTCAATG
Primer 2SWU01200_R: CCTCATCTGTGTTGGAACA
Product Length135
Publication[view all]
Commentmarker sequence confirmed
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:53227288..53227422 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A10chromosomeA10:95254844..95254978 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:50957821..50957955 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018211.1chromosomeCM018211.1:93106587..93106721 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:13811711..13811842 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_10chromosomeKI_10:9598985..9599119 -Gossypioides kirkii genome ISU_v3n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:22147684..22147818 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:14368019..14368153 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:119675960..119676094 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr11chromosomeDt_chr11:55112901..55113035 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr11chromosomeAt_chr11:9189943..9190077 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:50710653..50710787 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:84854601..84854735 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:53232937..53233071 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:98704766..98704900 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:53322701..53322835 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:99744446..99744580 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:51928935..51929069 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:98810987..98811121 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:50233955..50234089 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:93911431..93911565 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:50951159..50951293 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:93248559..93248693 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:51979793..51979927 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:94972012..94972146 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:94645566..94645700 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017632.1chromosomeCM017632.1:50926120..50926254 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:53049301..53049435 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:102229071..102229205 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:52167240..52167374 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:96370301..96370435 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:53277746..53277880 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:101809679..101809813 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:108457869..108458003 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:102715548..102715682 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:48525765..48525896 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:20219622..20219756 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:50011725..50011859 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:41352994..41353128 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:33310884..33311018 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:51343402..51343536 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:35730706..35730837 +Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:27739456..27739590 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:35602462..35602593 +Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:21584795..21584926 -Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:77991613..77991741 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:24652583..24652717 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>SWU01200 ID=SWU01200; Name=SWU01200; organism=Gossypium hirsutum; type=genetic_marker; length=135bp
AGTGGCTCTAGCTTCAATGCCTCGATTCCTGATTTCCTTCAAGACAGACG
TTTTAATACTCCTCCTACTTCTTCTTCAGCTTCGTTACTAAGAGACCATG
GACTCCTTCAGGATATTGTTCCAACACAGATGAGG