SWU01452, SWU01452 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSWU01452
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
Repeat Motif(GCA)3
Primer 1SWU01452_F: GAGCCGCTTTCTGTTAATC
Primer 2SWU01452_R: AGTTGTGTTCCCATTCTGT
Product Length102
Publication[view all]
Commentmarker sequence confirmed
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
scaffold_1962supercontigscaffold_1962:13794..13894 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A13chromosomeA13:40642071..40642172 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D13chromosomeD13:21521238..21521339 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:23017812..23017913 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018214.1chromosomeCM018214.1:41145096..41145197 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:24253313..24253414 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_13chromosomeKI_13:17901007..17901108 -Gossypioides kirkii genome ISU_v3n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:44616794..44616895 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:25335171..25335272 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:81909849..81909950 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:11019856..11019957 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr13chromosomeDt_chr13:10215831..10215932 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold4697_D13supercontigscaffold4697_D13:299993..300148 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold3551_A13supercontigscaffold3551_A13:393171..393272 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:23946919..23947020 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:41216500..41216601 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:23652012..23652113 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:43632174..43632275 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:24175360..24175461 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:41988700..41988801 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:22884788..22884889 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A13chromosomeA13:41158211..41158312 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:22995339..22995440 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:41570694..41570795 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:22737599..22737700 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A13chromosomeA13:44074071..44074172 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:22971991..22972092 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017622.1chromosomeCM017622.1:43191671..43191772 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:24370462..24370563 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017648.1chromosomeCM017648.1:44986635..44986736 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:23489031..23489132 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017700.1chromosomeCM017700.1:42732238..42732339 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:24429535..24429636 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A13chromosomeA13:43543303..43543404 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:76489400..76489501 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:44173184..44173285 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:23799156..23799257 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:55687033..55687134 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:24390682..24390783 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:40278310..40278411 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:34970675..34970776 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:25891950..25892051 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:36986017..36986118 +Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:29011060..29011161 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:35954483..35954584 +Gossypium lobatum (D7) genome ISU_v1n/a
E13chromosomeE13:53437054..53437155 -Gossypium stocksii (E1) genome NSF_v1n/a
F13chromosomeF13:32347528..32347629 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:91464889..91464990 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>SWU01452 ID=SWU01452; Name=SWU01452; organism=Gossypium hirsutum; type=genetic_marker; length=102bp
GAGCCGCTTTCTGTTAATCAGCAGATGTTCCAGCTTAACATATCTCATCA
GATGCAGCAGCAGTCACCTCCACAGCCCCAACAACAGAATGGGAACACAA
CT