SWU00664, SWU00664 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSWU00664
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
Repeat Motif(GCC)3,(ATC)3
Primer 1SWU00664_F: GATGTGAAGCTGGATAACG
Primer 2SWU00664_R: TTGAGGAGGTTGATGATGAT
Product Length138
PolymorphismP_ SWU00664
Publication[view all]
Commentmarker sequence confirmed
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:35300371..35300508 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:43951412..43951549 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:33893448..33893585 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:42476133..42476270 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:32082710..32082847 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_05chromosomeKI_05:28791729..28791857 -Gossypioides kirkii genome ISU_v3n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:44607630..44607767 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:28072958..28073098 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016618.1chromosomeCM016618.1:57651609..57651740 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:31257644..31257781 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr9chromosomeAt_chr9:81326310..81326447 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:34575404..34575541 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:40643982..40644119 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:34618462..34618599 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:42898364..42898501 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:33829929..33830066 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:42349222..42349359 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:34398683..34398820 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:43857387..43857524 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:34082528..34082665 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:42946211..42946348 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:34766858..34766995 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:41160255..41160392 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:34258527..34258664 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:42685178..42685315 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:34181036..34181173 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:42844187..42844324 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:34671058..34671195 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:44364951..44365088 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:34319611..34319748 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:42780487..42780624 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:35202818..35202955 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:44341806..44341943 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:45310742..45310879 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:45671970..45672106 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:32226091..32226228 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:41707237..41707374 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:33171225..33171362 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:28572059..28572196 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:27345476..27345616 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:34303811..34303948 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:25759982..25760119 -Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:22756789..22756926 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:26388637..26388774 -Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:50094496..50094633 -Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:38280679..38280819 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr05chromosomeChr05:68146183..68146323 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>SWU00664 ID=SWU00664; Name=SWU00664; organism=Gossypium hirsutum; type=genetic_marker; length=138bp
GATGTGAAGCTGGATAACGACAGGCCGCCGCCCCCGGCGGCTACGATTAG
CAGACCAGCAAGAACCCTGTTTCCAACAGGACTGTTCCAAGCGGCGTCGT
CAAATTCAAGCCACGATGATCATCATCAACCTCCTCAA