SWU00356, SWU00356 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSWU00356
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
Repeat Motif(ATG)3
Primer 1SWU00356_F: TTCCTCGGTCTCCAACAA
Primer 2SWU00356_R: AAGATTCATGTCCAGCAAGA
Product Length107
PolymorphismP_ SWU00356
Publication[view all]
Commentmarker sequence confirmed
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:58380451..58380557 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A08chromosomeA08:111391853..111391959 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:54855163..54855269 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:106270415..106270521 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:51179398..51179504 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_08chromosomeKI_08:32863252..32863358 +Gossypioides kirkii genome ISU_v3n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:115575783..115575889 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_08chromosomeD10_08:9891216..9891322 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016621.1chromosomeCM016621.1:18116380..18116486 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold941.1supercontigscaffold941.1:402256..402362 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold293.1supercontigscaffold293.1:579372..579478 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:54978074..54978180 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A08chromosomeA08:92247903..92248009 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:57587552..57587658 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:110067230..110067336 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:58397487..58397593 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:113028092..113028198 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:57482682..57482788 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:112881120..112881226 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:54754399..54754505 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A08chromosomeA08:108877430..108877536 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Scaffold3supercontigScaffold3:86738..86844 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D08chromosomeGbar_D08:54858673..54858779 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:56860570..56860676 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A08chromosomeA08:108080893..108080999 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:56369429..56369535 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017617.1chromosomeCM017617.1:106484487..106484593 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:58529844..58529950 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:115949773..115949879 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:107136712..107136818 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:58172224..58172330 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A08chromosomeA08:114737770..114737876 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:118523486..118523592 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:119466379..119466485 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:52062779..52062885 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:90568179..90568285 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:53619687..53619793 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr04chromosomechr04:40284235..40284341 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_04chromosomeChr_04:36694212..36694318 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:55915376..55915482 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:35246506..35246612 +Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:29629128..29629234 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr04chromosomeChr04:35770793..35770899 +Gossypium lobatum (D7) genome ISU_v1n/a
E08chromosomeE08:107327889..107327995 +Gossypium stocksii (E1) genome NSF_v1n/a
F08chromosomeF08:93042240..93042346 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr08chromosomeChr08:25035254..25035360 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>SWU00356 ID=SWU00356; Name=SWU00356; organism=Gossypium hirsutum; type=genetic_marker; length=107bp
TTCCTCGGTCTCCAACAACGACAGCAACATCTCAAGAAGAGTCACATTTA
ATCAATGATGATGAAGCATTCATTGACCTTCCAGATCTCTTGCTGGACAT
GAATCTT