PGML1047, PGML1047 (genetic_marker) Gossypium raimondii

Marker Overview


Name	PGML1047
Genbank ID	N/A
Type	SSR
Species	Gossypium raimondii
Repeat Motif	(TA)11
Primer 1	PGML1047_F: TCAGAAAGCTCGAATATAAACCA
Primer 2	PGML1047_R: TATCGCAAATGATATCCGCA
Product Length	95
Publication	[view all]
Comment	BAC_ID=FITC158677.g1

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
D05	chromosome	D05:15061862..15061953 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1	n/a
CM018219.1	chromosome	CM018219.1:14165196..14165288 -	Gossypium barbadense (AD2) '3-79' genome HGS_v1.1	n/a
D5_05	chromosome	D5_05:13311105..13311199 -	Gossypium raimondii (D5) 'D5-4' genome NSF_v1	n/a
At_chr7	chromosome	At_chr7:4992857..4992948 -	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
D05	chromosome	D05:14506745..14506836 -	Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1	n/a
D05	chromosome	D05:14400530..14400621 -	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
Gbar_D05	chromosome	Gbar_D05:14586406..14586498 -	Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1	n/a
D05	chromosome	D05:14551651..14551743 -	Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1	n/a
CM017627.1	chromosome	CM017627.1:14447846..14447940 -	Gossypium tomentosum (AD3) genome HGS_v1.1	n/a
CM017705.1	chromosome	CM017705.1:14577197..14577289 -	Gossypium darwinii (AD5) genome HGS_v1.1	n/a
D05	chromosome	D05:14878709..14878800 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a
Chr05	chromosome	Chr05:13368716..13368810 -	Gossypium raimondii (D5) 'Grai D502' genome HAU_v1	n/a
Chr09_2484659	chromosome	Chr09_2484659:6631..6738 -	Gossypium harknessii (D2-2) genome ISU_v1	n/a
Chr09	chromosome	Chr09:14365459..14365558 -	Gossypium davidsonii (D3d-8) genome CRI_v1	n/a
Chr09	chromosome	Chr09:12005514..12005620 -	Gossypium lobatum (D7) genome ISU_v1	n/a

Publications


Year	Publication
2015	Tang S, Teng Z, Zhai T, Fang X, Liu F, Liu D, Zhang J, Liu D, Wang S, Zhang K, Shao Q. Construction of genetic map and QTL analysis of fiber quality traits for Upland cotton (Gossypium hirsutum L.). Euphytica. 2015 Jan 1;201(2):195-213.

Sequence

>PGML1047 ID=PGML1047; Name=PGML1047; organism=Gossypium raimondii; type=genetic_marker; length=95bp
TCAGAAAGCTCGAATATAAACCATAATATATATATATATATATAATATAA
GAAAACAAATTAAAGAAACTTCACGTGCGGATATCATTTGCGATA

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PGML1047, PGML1047 (genetic_marker) Gossypium raimondii