PGML0976, PGML0976 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0976
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(CTT)5
Primer 1PGML0976_F: TCAGCAGACTGCATTGGTTC
Primer 2PGML0976_R: CCACTAGACATTCCGGCCTA
Product Length232
Publication[view all]
CommentBAC_ID=FITB9368.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:38509167..38509423 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D06chromosomeD06:18453903..18454139 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D03chromosomeD03:14878291..14878528 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A07chromosomeA07:55477109..55477343 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D10chromosomeD10:33187698..33187929 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D04chromosomeD04:24276708..24276936 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:17254724..17254954 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018226.1chromosomeCM018226.1:29552025..29552274 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018224.1chromosomeCM018224.1:31443706..31443937 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:31392615..31392846 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_11chromosomeD10_11:56119252..56119542 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_10chromosomeD10_10:31996801..31997032 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_10chromosomeD10_10:30814302..30814524 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_01chromosomeD10_01:23818662..23818888 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016616.1chromosomeCM016616.1:53638112..53638346 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr11chromosomeDt_chr11:40530466..40530702 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr3chromosomeDt_chr3:4926716..4926953 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr12chromosomeDt_chr12:19587749..19587977 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr11chromosomeDt_chr11:31748273..31748504 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr13chromosomeAt_chr13:87670343..87670577 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold3920_D03supercontigscaffold3920_D03:1769747..1769984 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold4101_D06supercontigscaffold4101_D06:18071..18307 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold3570_A13supercontigscaffold3570_A13:3330575..3330809 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D10chromosomeD10:31865943..31866174 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D04chromosomeD04:22237311..22237539 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:37825404..37825663 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D06chromosomeGhir_D06:18181667..18181903 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D03chromosomeGhir_D03:17834064..17834301 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:43145621..43145855 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D10chromosomeGhir_D10:31733863..31734094 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D10chromosomeGhir_D10:33253064..33253292 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D04chromosomeGhir_D04:22645005..22645233 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:37710880..37711139 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:17678206..17678442 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:18647309..18647546 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:45568174..45568408 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:30880776..30881007 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:22331365..22331593 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:38092720..38092979 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:18152909..18153145 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:18781047..18781284 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:43864590..43864824 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:31662085..31662316 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:22349759..22349987 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:17678694..17678930 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D03chromosomeD03:17609454..17609691 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A13chromosomeA13:42961589..42961823 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D10chromosomeD10:31886758..31886989 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D04chromosomeD04:21914254..21914482 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:17430536..17430766 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D12chromosomeGbar_D12:28854695..28854944 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D10chromosomeGbar_D10:31324947..31325178 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:17163784..17164014 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D10chromosomeD10:31669047..31669278 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:17958806..17959048 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017632.1chromosomeCM017632.1:31375203..31375434 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017626.1chromosomeCM017626.1:21787259..21787487 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017625.1chromosomeCM017625.1:17544754..17544990 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:38649983..38650218 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017654.1chromosomeCM017654.1:17617110..17617349 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017648.1chromosomeCM017648.1:46818836..46819070 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017658.1chromosomeCM017658.1:32085393..32085624 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017651.1chromosomeCM017651.1:18148893..18149130 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:37971161..37971405 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017706.1chromosomeCM017706.1:17443385..17443615 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017710.1chromosomeCM017710.1:32040721..32040952 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:18338056..18338292 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A13chromosomeA13:45486617..45486851 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D10chromosomeD10:32094574..32094805 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D04chromosomeD04:23049239..23049467 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D03chromosomeD03:18089936..18090173 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:16341439..16341676 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:31268809..31269040 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:64031012..64031240 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:34161658..34161889 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr10chromosomeChr10:18016342..18016579 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr05chromosomeChr05:44264918..44265152 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr03chromosomechr03:11954280..11954510 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:22112544..22112926 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr_11chromosomeChr_11:22860539..22860867 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:38830231..38830459 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:25797165..25797411 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:23936621..23936854 -Gossypium lobatum (D7) genome ISU_v1n/a
E01chromosomeE01:40036799..40037024 +Gossypium stocksii (E1) genome NSF_v1n/a
Sequence
>PGML0976 ID=PGML0976; Name=PGML0976; organism=Gossypium raimondii; type=genetic_marker; length=232bp
TCAGCAGACTGCATTGGTTCGATCTTTGTGGGATCTTCTTCTTCTTCTTC
GGGATCCTCACTCTCTTCAACTTGTTACTGCAGAATAGAATCTTCAGCTA
TTCGGTAAAGGTCTCAATTTGTGATTGTGCCCTGACTATAACCTATCTTC
TTTATGTTTGCAAGAATTTTAGCTTTCAAGCACAAAATTGTTATCGCAAA
GGGAAAGTAAGCTAGGCCGGAATGTCTAGTGG