PGML0875, PGML0875 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0875
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AAAAC)3
Primer 1PGML0875_F: GAAACGGCAAAGATGAAAGC
Primer 2PGML0875_R: CGTACCCTTGGTCCTGTGTT
Product Length339
Publication[view all]
CommentBAC_ID=FITB1075.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:57198561..57198899 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:53674200..53674538 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:13557265..13557603 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_03chromosomeD10_03:13577611..13577950 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016616.1chromosomeCM016616.1:38704198..38704521 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr5chromosomeDt_chr5:23623308..23623646 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:54351859..54352197 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:56142088..56142426 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:56670897..56671235 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:57587262..57587600 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:54581092..54581430 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:54219659..54219997 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:55531839..55532177 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:56524005..56524343 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:57887297..57887635 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:55110479..55110817 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:58528971..58529309 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:49683470..49683808 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr05chromosomeChr05:52470271..52470611 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr05chromosomechr05:39053964..39054759 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_05chromosomeChr_05:34114196..34114538 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:54032885..54033223 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:34540958..34541284 +Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:36001061..36001392 +Gossypium lobatum (D7) genome ISU_v1n/a
Sequence
>PGML0875 ID=PGML0875; Name=PGML0875; organism=Gossypium raimondii; type=genetic_marker; length=339bp
GAAACGGCAAAGATGAAAGCTTAAAATACAGAGAGAGAACAAAACACCAC
AAGAATTCCTAAGATCTCAAGAGCATCAATTGTCAAAGGAAAGAAAGAAA
AATTGAAGAAGAGGAACGAAAGAAAAAACAAAACAAAACTGCACGTTAAA
AAGAGTGGGAAAGAAAGGAACAGTTTGTAGGAGGAATTTTAGGGATTCGT
TTATTCAAAAATAAAAAACTAAAACACGATTCAAGAAGATTTAAACCAAT
CAATTTTCTTTCTTAGAGTTGGAACCAAAAATTAAAACAAGATTTTCACT
TCGCTCATATTGGAACTCGAACACAGGACCAAGGGTACG