PGML0828, PGML0828 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0828
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TTTTC)3
Primer 1PGML0828_F: TCCAGCAGTCGATGTACCAG
Primer 2PGML0828_R: GAATCACCAGCACCATCCTT
Product Length258
Publication[view all]
CommentBAC_ID=FITB1165.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:2526460..2526717 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A13chromosomeA13:3127673..3127922 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:2321673..2321930 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018214.1chromosomeCM018214.1:2745224..2745473 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:2064515..2064772 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_13chromosomeKI_13:1442555..1442807 +Gossypioides kirkii genome ISU_v3n/a
D10_13chromosomeD10_13:2117659..2117911 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016618.1chromosomeCM016618.1:94197494..94197751 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr7chromosomeDt_chr7:36574011..36574260 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr13chromosomeDt_chr13:54597879..54598136 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:2420255..2420512 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A13chromosomeA13:2749483..2749732 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:2366834..2367091 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:2716955..2717204 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:2250094..2250351 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:2847201..2847450 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:2374799..2375056 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:2621412..2621661 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:2397552..2397809 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A13chromosomeA13:2719499..2719748 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:2120750..2121007 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:2814052..2814301 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:2131614..2131871 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A13chromosomeA13:2733687..2733936 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:2222731..2222988 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017622.1chromosomeCM017622.1:2896650..2896899 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:2437556..2437813 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017648.1chromosomeCM017648.1:2845950..2846197 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:2230503..2230760 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017700.1chromosomeCM017700.1:2554618..2554867 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:2476898..2477155 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A13chromosomeA13:2979107..2979356 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:2836310..2836574 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:2073501..2073758 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:92314105..92314362 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:2175250..2175502 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:2166842..2167094 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:2391398..2391649 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:2378943..2379195 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:2310653..2310905 +Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:1644315..1644567 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeChr13:2324746..2324998 +Gossypium lobatum (D7) genome ISU_v1n/a
E13chromosomeE13:3164386..3164648 +Gossypium stocksii (E1) genome NSF_v1n/a
F13chromosomeF13:2353275..2353523 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr05chromosomeChr05:112546140..112546397 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0828 ID=PGML0828; Name=PGML0828; organism=Gossypium raimondii; type=genetic_marker; length=258bp
TCCAGCAGTCGATGTACCAGTATTGCATGGATCCCCGGAGGTGATGGTGC
TTTTGTGGTTGCCCATGCTGATGGAAATATGTACATATATGAAAAGGCAA
GTTTCTAATAATTAAAGAAGGCTTTTTCTGCTTCTGGGAGTTCAACTTAC
AAGTTTCTTGATGTTCTATGCAGTAAGTTATTTAAGTTATTATTATTTCT
TTTCTTTTCTTTTCATTTCATTTTTTGCTCTCTAGAACAAGGATGGTGCT
GGTGATTC