PGML0818, PGML0818 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0818
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AT)8
Primer 1PGML0818_F: TCAGTTGGTTTATTCCTTTCCTTT
Primer 2PGML0818_R: CCTCATGGACCATCCTCACT
Product Length178
Publication[view all]
CommentBAC_ID=FITB1362.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A11chromosomeA11:6349111..6349287 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018212.1chromosomeCM018212.1:6423946..6424120 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:60152259..60152437 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:117997896..117998070 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:5745948..5746125 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:7921691..7921893 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr7chromosomeAt_chr7:7293264..7293440 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold2735_A11supercontigscaffold2735_A11:97591..97767 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:6599727..6599903 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:6289163..6289339 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:6475902..6476078 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:6649497..6649673 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A11chromosomeGbar_A11:6207533..6207707 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:6422562..6422736 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:6600156..6600330 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:6132185..6132358 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:6656468..6656642 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:6468439..6468613 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:6767627..6767803 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:6593661..6593832 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:6331715..6331889 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:57637213..57637391 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
chr07chromosomechr07:5203939..5204258 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:5582659..5582836 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:6000427..6000608 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:4901205..4901372 +Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:4451709..4451878 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:5075841..5076014 +Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:7167529..7167700 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr11chromosomeChr11:178903923..178904102 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0818 ID=PGML0818; Name=PGML0818; organism=Gossypium raimondii; type=genetic_marker; length=178bp
TCAGTTGGTTTATTCCTTTCCTTTTATATAGAGGTTGAGGCTTATATATA
TATATATATGTACATATATTTTTCAACAATGTCCTAGATATAGCTTGGTA
TGCATTAGGGAATTTGGAATTATACGGTTTAAATGGCCACGATCCACATC
AAATTATTAGTGAGGATGGTCCATGAGG