PGML0816, PGML0816 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0816
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TCAT)4
Primer 1PGML0816_F: TGGTCTAGATTCCAACCGATTT
Primer 2PGML0816_R: TAGCAGTGTGCAACTTTGGG
Product Length387
Publication[view all]
CommentBAC_ID=FITB8120.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:65868790..65869198 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:62012975..62013383 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:4907850..4908236 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr5chromosomeDt_chr5:11834497..11834905 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:62897443..62897851 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:64703582..64703990 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:64829970..64830378 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:66040447..66040855 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:63152261..63152669 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:62610869..62611277 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:63918680..63919088 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:64961462..64961870 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:66569798..66570191 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:63501577..63501985 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:67048717..67049125 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:58187007..58187393 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr05chromosomeChr05:62689821..62690256 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Sequence
>PGML0816 ID=PGML0816; Name=PGML0816; organism=Gossypium raimondii; type=genetic_marker; length=387bp
TGGTCTAGATTCCAACCGATTTTGATTTTCAATCTGTTGTGATTTTTATT
GATGTGATTTGTATTCTACTTATAATTATAACTGTAACTCTTTAAAACCA
TTTCTTTTTTCGTTCATCCATCTTTTACATAAATTACATTAATTCTTAAA
AGTTATATTTTAATTACTAAAATTAGACTAAAGCATCCTATCATCATCAT
CATCATAAAAGCATGATCAAAAGATGCCAAACCACCAAATGAACAATTAT
TTCCATTTCTATCATTTGAAGGAGGAACTTTGATTCTGACAATGTTATAC
CAAATCATACCGCAAGCCAAGTTTCAAGTGATAGTTTCCAGCCTTTAGAA
GGTACACTTGACACATTCCCAAAGTTGCACACTGCTA