PGML0815, PGML0815 (genetic_marker) Gossypium raimondii

Marker Overview


Name	PGML0815
Genbank ID	N/A
Type	SSR
Species	Gossypium raimondii
Repeat Motif	(TATTT)3
Primer 1	PGML0815_F: TTGGAATGATATTGGACACCTTT
Primer 2	PGML0815_R: GGGTGCTTATGGTGGCTAGT
Product Length	309
Publication	[view all]
Comment	BAC_ID=FITB8304.y2

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
D5_06	chromosome	D5_06:60551588..60551894 -	Gossypium raimondii (D5) 'D5-4' genome NSF_v1	n/a
D10_06	chromosome	D10_06:384975..385278 +	Gossypium turneri (D10) genome NSF_v1_a2	n/a
Chr06	chromosome	Chr06:60158846..60159154 -	Gossypium raimondii (D5) 'Grai D502' genome HAU_v1	n/a
Chr10	chromosome	Chr10:62808383..62808681 -	Gossypium thurberi (D1-5) genome CRI_v1	n/a
Chr_10	chromosome	Chr_10:43221762..43222063 +	Gossypium harknessii (D2-2) genome ISU_v1	n/a
Chr10	chromosome	Chr10:64431007..64431313 -	Gossypium davidsonii (D3d-8) genome CRI_v1	n/a
Chr10	chromosome	Chr10:41507184..41507919 +	Gossypium aridum (D4) genome ISU_v1	n/a
Chr10	chromosome	Chr10:43128232..43128534 +	Gossypium lobatum (D7) genome ISU_v1	n/a

Publications


Year	Publication
2015	Tang S, Teng Z, Zhai T, Fang X, Liu F, Liu D, Zhang J, Liu D, Wang S, Zhang K, Shao Q. Construction of genetic map and QTL analysis of fiber quality traits for Upland cotton (Gossypium hirsutum L.). Euphytica. 2015 Jan 1;201(2):195-213.

Sequence

>PGML0815 ID=PGML0815; Name=PGML0815; organism=Gossypium raimondii; type=genetic_marker; length=309bp
TTGGAATGATATTGGACACCTTTAACAGGCCTATATGTTGGTTATTTTAT
TTTATTTATGTAATTTATATCATAAAAATAGTAAATAGTAAATATTTAAA
AATATGTTAACTCATATATGCATAAATTTAATAAAATATATATAATGACT
AAATCTAAATCTAAAACAAAAATAATTATAATTTTTAAAAATATAAAAAA
AAATACAATAGGAACCTAAACAAACTTGAAATAGACATCTACAAATATGA
ACAAGCTTAACTAAAATTTGGGGCGCATAATCCGGCTAAACTAGCCACCA
TAAGCACCC

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PGML0815, PGML0815 (genetic_marker) Gossypium raimondii