PGML0814, PGML0814 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0814
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TTAA)5
Primer 1PGML0814_F: AAATTGGGTTGGTTTAGGGT
Primer 2PGML0814_R: TCAAATGCACACCTTTAGCG
Product Length253
Publication[view all]
CommentBAC_ID=FITB8191.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:7107094..7107346 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:6322201..6322453 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:6805113..6805365 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_09chromosomeD10_09:38064487..38064749 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016622.1chromosomeCM016622.1:88013251..88013506 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr6chromosomeDt_chr6:42087962..42088214 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:6830828..6831080 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:7378355..7378607 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:6796155..6796407 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:6865633..6865885 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:6733219..6733471 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D09chromosomeGbar_D09:7482080..7482332 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:8318418..8318670 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:6448516..6448768 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:6054613..6054865 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:6683381..6683633 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:7157263..7157515 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:6792765..6793017 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr06chromosomeChr06:6112443..6112705 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_06chromosomeChr_06:5587505..5587767 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:3824780..3825032 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr06chromosomeChr06:4974934..4975201 +Gossypium lobatum (D7) genome ISU_v1n/a
E09chromosomeE09:73282767..73283027 -Gossypium stocksii (E1) genome NSF_v1n/a
Sequence
>PGML0814 ID=PGML0814; Name=PGML0814; organism=Gossypium raimondii; type=genetic_marker; length=253bp
AAATTGGGTTGGTTTAGGGTATAATTTAATTAGTTTAATTAATTTAATTA
ATTAAATGAATAAATAATATTTTAGGGTTTAGGAAATATATCCATTGGGT
TAGACAAATTATATGAGTTAGTTTAAAGACCATATAACACATATAATTAA
CCCGATGCATGACAAGGCCTAATAGCCCCGATTTAGAAGGAAGGGGAGGC
AAAACCCTAGTTCCAAAAGAGTGTTGCTACTACCGCTAAAGGTGTGCATT
TGA