PGML0811, PGML0811 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0811
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(CT)10
Primer 1PGML0811_F: TCATTGCCAACTGATGGATG
Primer 2PGML0811_R: ACCAGCTTGCTCACTTCGAT
Product Length258
Publication[view all]
CommentBAC_ID=FITB8246.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:14669735..14670036 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A12chromosomeA12:28582013..28582252 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:27925837..27926092 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018213.1chromosomeCM018213.1:25077308..25077563 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:42413138..42413393 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:78007821..78008070 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_12chromosomeD10_12:11941820..11942095 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016625.1chromosomeCM016625.1:46856589..46856848 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr8chromosomeDt_chr8:8945730..8946009 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr8chromosomeAt_chr8:32909597..32909836 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:14735094..14735351 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold3309_A12supercontigscaffold3309_A12:51133..51372 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:30043277..30043576 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:26098861..26099100 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:29399604..29399897 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:25526308..25526547 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:30050844..30051145 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:25981730..25981969 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:27962892..27963201 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:15346630..15346885 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:25152805..25153056 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:28484905..28485160 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A12chromosomeA12:24819946..24820201 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:15392968..15393243 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017621.1chromosomeCM017621.1:25055394..25055657 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:29135896..29136153 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017647.1chromosomeCM017647.1:25498912..25499151 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:28991007..28991262 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017699.1chromosomeCM017699.1:25151941..25152194 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:30030337..30030638 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A12chromosomeA12:26229929..26230168 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:66617408..66617659 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:27761924..27762173 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:15189030..15189287 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:21860396..21860649 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr08chromosomeChr08:15272730..15272979 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:13841203..13841589 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:12922055..12922403 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:15608810..15609063 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:12461941..12462302 -Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:9421690..9421949 -Gossypium gossypioides (D6) genome ISU_v1n/a
E12chromosomeE12:27362151..27362432 -Gossypium stocksii (E1) genome NSF_v1n/a
F12chromosomeF12:22277496..22277731 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr12chromosomeChr12:123444662..123444919 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0811 ID=PGML0811; Name=PGML0811; organism=Gossypium raimondii; type=genetic_marker; length=258bp
TCATTGCCAACTGATGGATGCGGTTCACCCGGGAATGGTGCCGATGCATG
GAGTCAACTTCGACGCCAAAAATGAATACTATATGATCCAAAATTACAAT
GACCTCCAAGACTTGTTTAACAAACTCAAAATCACCAAGGTTTTAATGGC
AATCTTGTCGATATGTTCTCTCTCTCTCTCTCTCTCTTTTCTTTTTTGCT
TTGGTTGTTTTGAATTTTGACTTTGGGGATTTTAGCATATCGAAGTGAGC
AAGCTGGT