PGML0809, PGML0809 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0809
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AATTT)3
Primer 1PGML0809_F: GTGTGGATTGTGGAAGACCC
Primer 2PGML0809_R: TACTCCATGCCATCAAACCA
Product Length139
Publication[view all]
CommentBAC_ID=FITB8341.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:13692083..13692225 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A10chromosomeA10:17993757..17993902 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:12519278..12519420 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018211.1chromosomeCM018211.1:17157504..17157649 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:49901745..49901883 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:110745864..110746008 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016623.1chromosomeCM016623.1:22144399..22144544 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr11chromosomeDt_chr11:10590309..10590451 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:12478224..12478366 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:17016886..17017031 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:12947532..12947674 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:17413015..17413158 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:13165253..13165395 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:17024456..17024601 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:13118095..13118237 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:17888523..17888668 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:12321028..12321170 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:17427927..17428072 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:12886966..12887108 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:17214487..17214632 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:12728022..12728164 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:17321941..17322086 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:13055190..13055333 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:17874777..17874922 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:12857480..12857622 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:17533179..17533324 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:13247187..13247329 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:17986985..17987130 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:18170019..18170163 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:18596854..18596998 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:12239978..12240115 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:84907899..84908044 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr_11chromosomeChr_11:9378943..9379083 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:12571571..12571714 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:10408555..10408693 +Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:8169252..8169393 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:10384043..10384182 +Gossypium lobatum (D7) genome ISU_v1n/a
F10chromosomeF10:14146681..14146811 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:138387704..138387846 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0809 ID=PGML0809; Name=PGML0809; organism=Gossypium raimondii; type=genetic_marker; length=139bp
GTGTGGATTGTGGAAGACCCTAAGGACTTCCTTTTATACATGATTACACA
TTTACAAGCATGACATTAACATTTAATAAAATAATTTAATTTAATTTAAT
TAAAAAAATGCGAAAAACTTGGTTTGATGGCATGGAGTA