PGML0798, PGML0798 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0798
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(GCAAA)3
Primer 1PGML0798_F: CCAACTTATTCAACCACCCAA
Primer 2PGML0798_R: GGAGTAGCCTCTAATCTTCTCCG
Product Length259
Publication[view all]
CommentBAC_ID=FITB1896.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:40658693..40658950 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:38369813..38370069 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018210.1chromosomeCM018210.1:63687095..63687359 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:32197713..32197971 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:70516151..70516415 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_09chromosomeD10_09:11336151..11336409 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016622.1chromosomeCM016622.1:18018363..18018633 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr6chromosomeDt_chr6:11213229..11213486 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:38450770..38451027 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:40456472..40456729 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:67861273..67861406 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:40152844..40153101 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:40213784..40214041 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:38284252..38284509 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D09chromosomeGbar_D09:39062259..39062515 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Scaffold2618supercontigScaffold2618:19273..19537 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:41524251..41524508 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A09chromosomeA09:65594478..65594742 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:39526590..39526848 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:40728150..40728408 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017644.1chromosomeCM017644.1:68306925..68307189 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:39847007..39847264 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017696.1chromosomeCM017696.1:65514098..65514362 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:41918586..41918843 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:69738740..69739004 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:72980099..72980363 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr09chromosomeChr09:38430284..38430540 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:57158979..57159246 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:38849430..38849688 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr06chromosomechr06:31884533..31884792 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_06chromosomeChr_06:26742069..26742329 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:40261290..40261518 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:29383639..29383899 +Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:22018237..22018503 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr06_6335741chromosomeChr06_6335741:2984..3242 -Gossypium lobatum (D7) genome ISU_v1n/a
E09chromosomeE09:15981219..15981484 -Gossypium stocksii (E1) genome NSF_v1n/a
F09chromosomeF09:58236600..58236864 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>PGML0798 ID=PGML0798; Name=PGML0798; organism=Gossypium raimondii; type=genetic_marker; length=259bp
CCAACTTATTCAACCACCCAAAAAAAATATTATTATTACAAAAGGCAAAG
CAAAGCAAACTGCATAATATGAATACAAAAGAAATAGGATCAATACCCTT
ATATATCTATGATATATAAGAAAATCACACCAATTACATTACAAAATCAA
ATTTATGTCACTAATGTAACATGACATATATAGAGATATCTAAAACTTTA
GAGAAATTGAAAATTGATAACACCCAAATATTATCTCGGAGAAGATTAGA
GGCTACTCC