PGML0794, PGML0794 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0794
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(CA)9
Primer 1PGML0794_F: CCTCCATGGTTGGTTTCATC
Primer 2PGML0794_R: GAAGGCCTTAGAGCTTCCTTT
Product Length219
Publication[view all]
CommentBAC_ID=FITB1597.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:45458715..45458940 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:42629456..42629681 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:23997312..23997530 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_03chromosomeD10_03:24134046..24134286 -Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr8chromosomeAt_chr8:73930657..73930882 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold989.1supercontigscaffold989.1:601445..601670 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:43016849..43017074 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:44888841..44889066 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:46330625..46330850 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:43681882..43682107 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:43277248..43277473 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:44531667..44531892 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:45408438..45408663 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:46559530..46559757 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:44078429..44078654 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:47077549..47077774 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:39562712..39562930 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr05chromosomeChr05:41863511..41863732 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr05chromosomechr05:30701684..30701930 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr05chromosomeChr05:43160963..43161182 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:23081820..23082044 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr05chromosomeChr05:29002832..29003060 +Gossypium lobatum (D7) genome ISU_v1n/a
E03chromosomeE03:83944219..83944429 -Gossypium stocksii (E1) genome NSF_v1n/a
Sequence
>PGML0794 ID=PGML0794; Name=PGML0794; organism=Gossypium raimondii; type=genetic_marker; length=219bp
CCTCCATGGTTGGTTTCATCTGAAAAGACACTTTTGAATTAAAATTGGGT
ATGAAATCTCACTTTAATTTCAAAGAATTTTAGGTTAGGAATATGCTTGA
ATAAGAAAATGACCAAATTGAAATAAATGGAAAACTTCCTCTCTTCTCAT
GGTTTCCCATGCCACACACACACACACACATCTATGCAACTATATAAAAA
AGGAAGCTCTAAGGCCTTC