PGML0790, PGML0790 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0790
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(CCTT)4
Primer 1PGML0790_F: AAATGAGCTATCACCACGTCA
Primer 2PGML0790_R: TGGGTGAGGTTCCCAAATTA
Product Length230
Publication[view all]
CommentBAC_ID=FITB1581.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:67164044..67164272 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:64102386..64102615 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:918703..918931 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_10chromosomeKI_10:708975..709200 +Gossypioides kirkii genome ISU_v3n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:349056..349281 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:929503..929727 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:144761877..144762101 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold613.1supercontigscaffold613.1:94202..94430 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:62814125..62814353 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:66880530..66880756 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:66014087..66014315 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:65058714..65058942 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:63309542..63309770 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:64732266..64732495 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:65883666..65883895 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:64667750..64667979 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:66818215..66818444 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:117580740..117580965 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:64948000..64948229 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:67188608..67188836 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:127338341..127338566 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:123063263..123063488 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:61018053..61018281 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:1239230..1239456 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:63097670..63097896 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_11chromosomeChr_11:43065814..43066039 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:64831125..64831351 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:48640587..48640812 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:47733973..47734197 -Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:1770526..1770751 +Gossypium stocksii (E1) genome NSF_v1n/a
Sequence
>PGML0790 ID=PGML0790; Name=PGML0790; organism=Gossypium raimondii; type=genetic_marker; length=230bp
AAATGAGCTATCACCACGTCATATCTTAAATCAGCAAAAATAAAAAATTA
TTCATACTTTAAAAAAATGTTATTCATTAATAATAAATACAAATTCCTCA
TATTTAATATAAAATAACAAAGCATAAGTATTATTAATTTTTAATTATAA
GTAAATAAAAATCTGGATACCTTCCTTCCTTCCTTTGCATTGTATGCTAT
TCCGTTATTTTAATTTGGGAACCTCACCCA