PGML0787, PGML0787 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0787
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(CAA)5
Primer 1PGML0787_F: GCTTCTTCAACCGCAGATTT
Primer 2PGML0787_R: GTTGCCTCGGACTCTCACTC
Product Length119
Publication[view all]
CommentBAC_ID=FITB1739.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:18147443..18147561 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:81731747..81731869 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018218.1chromosomeCM018218.1:16627057..16627176 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:77962674..77962796 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:34536255..34536373 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_06chromosomeKI_06:58839615..58839731 +Gossypioides kirkii genome ISU_v3n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:69198583..69198705 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_04chromosomeD10_04:16403411..16403544 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016617.1chromosomeCM016617.1:34720552..34720672 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr12chromosomeDt_chr12:37509925..37510043 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr9chromosomeAt_chr9:5380043..5380165 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold5057supercontigscaffold5057:13219..13341 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D04chromosomeD04:16799649..16799767 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:17336595..17336713 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:83876511..83876633 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:16959961..16960079 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:86115772..86115894 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:17300867..17300985 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:84899972..84900094 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:16715139..16715257 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:83870828..83870950 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D04chromosomeGbar_D04:16756768..16756887 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:78958372..78958494 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:16616349..16616468 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:81822869..81822991 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:81002933..81003055 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017626.1chromosomeCM017626.1:16762950..16763070 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:17301286..17301405 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:86019857..86019979 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:16696157..16696276 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:80499824..80499946 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:17769585..17769703 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:86282658..86282780 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:25001073..25001195 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:33162164..33162286 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr04chromosomeChr04:34307400..34307518 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_02chromosomeB_02:62123072..62123206 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr12chromosomeChr12:16921259..16921378 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr12chromosomechr12:14865247..14865369 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_12chromosomeChr_12:11256062..11256272 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr12chromosomeChr12:16667585..16667703 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr12chromosomeChr12:13920702..13920925 -Gossypium aridum (D4) genome ISU_v1n/a
Chr12chromosomeChr12:10442480..10442695 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr12chromosomeChr12:12974517..12974637 -Gossypium lobatum (D7) genome ISU_v1n/a
E04chromosomeE04:28231761..28231895 -Gossypium stocksii (E1) genome NSF_v1n/a
F04chromosomeF04:21424185..21424323 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr04chromosomeChr04:40859150..40859275 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0787 ID=PGML0787; Name=PGML0787; organism=Gossypium raimondii; type=genetic_marker; length=119bp
GCTTCTTCAACCGCAGATTTCAACAACAACAACAAAAAAACCCTTACCTC
TGAAGATTGATTGTTGCGTTTTGTTGACATGGTTGGATCCACGGATGCTG
AGTGAGAGTCCGAGGCAAC