PGML0780, PGML0780 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0780
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AT)9
Primer 1PGML0780_F: CGGTTGAATATGGAAGAGTTGG
Primer 2PGML0780_R: GATCCATTCCGAAGGTTCAA
Product Length85
Publication[view all]
CommentBAC_ID=FITB1769.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:9378146..9378225 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D5_10chromosomeD5_10:46813180..46813263 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_05chromosomeD5_05:11709464..11709558 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_04chromosomeD5_04:25441117..25441203 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_04chromosomeD5_04:37195546..37195627 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_07chromosomeD5_07:108867..108964 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
scaffold71.1supercontigscaffold71.1:2031532..2031611 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold125847supercontigscaffold125847:29..108 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D04chromosomeD04:8541950..8542029 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:26686416..26686488 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D09chromosomeGhir_D09:47579306..47579382 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D07chromosomeGhir_D07:4060447..4060519 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D04chromosomeGhir_D04:9210890..9210969 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D08chromosomeGhir_D08:50959928..50959999 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D06chromosomeGhir_D06:53430154..53430226 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D05chromosomeGhir_D05:32849693..32849765 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D02chromosomeGhir_D02:63852619..63852690 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D02chromosomeGhir_D02:16299187..16299258 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:8998988..8999067 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:9110700..9110779 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:8526722..8526801 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:26190507..26190578 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D09chromosomeGbar_D09:46143390..46143466 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D07chromosomeGbar_D07:4010003..4010074 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D08chromosomeGbar_D08:48305735..48305807 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D06chromosomeGbar_D06:50009348..50009419 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D05chromosomeGbar_D05:32596235..32596307 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D02chromosomeGbar_D02:16130468..16130538 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D02chromosomeGbar_D02:61735895..61735966 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:9589187..9589266 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:53420688..53420785 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr05chromosomeChr05:11763688..11763784 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr04chromosomeChr04:25413146..25413232 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr04chromosomeChr04:36965406..36965488 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr01chromosomeChr01:27225830..27225909 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:15331676..15331760 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr05chromosomeChr05:17666511..17666590 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Sequence
>PGML0780 ID=PGML0780; Name=PGML0780; organism=Gossypium raimondii; type=genetic_marker; length=85bp
CGGTTGAATATGGAAGAGTTGGAAAAAGGTTTAAAATATATATATATATA
TATGAGAATTTGTGGTTGAACCTTCGGAATGGATC