PGML0774, PGML0774 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0774
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AAAAT)3
Primer 1PGML0774_F: CAATCCCAAGTAATTCAAACCC
Primer 2PGML0774_R: GCGTATTTGGAACACTGAATG
Product Length134
Publication[view all]
CommentBAC_ID=FITB3367.y1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:36628241..36628375 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A13chromosomeA13:67099059..67099190 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018214.1chromosomeCM018214.1:71651176..71651307 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:32310393..32310526 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:82291443..82291574 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:34235608..34235741 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:105939651..105939785 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr13chromosomeAt_chr13:33491525..33491656 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr13chromosomeDt_chr13:33273946..33274080 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:32515509..32515643 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A13chromosomeA13:44423309..44423440 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:35992383..35992517 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:70743534..70743665 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:37359575..37359709 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:73828440..73828571 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:36105892..36106026 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:71623591..71623722 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:33039962..33040096 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A13chromosomeA13:70317760..70317891 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:32729625..32729750 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:72790557..72790688 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A13chromosomeA13:75897916..75898047 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:73370178..73370309 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017648.1chromosomeCM017648.1:76875728..76875859 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017700.1chromosomeCM017700.1:74216416..74216547 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:37067013..37067147 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A13chromosomeA13:73770726..73770857 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:40432247..40432378 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:81104056..81104187 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:32517715..32517848 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:39709317..39709451 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:33245542..33245675 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:23643491..23643624 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:22706823..22706956 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:35789913..35790046 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:22864347..22864479 +Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:22272686..22272819 +Gossypium lobatum (D7) genome ISU_v1n/a
E13chromosomeE13:72928043..72928181 -Gossypium stocksii (E1) genome NSF_v1n/a
F13chromosomeF13:60716048..60716183 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>PGML0774 ID=PGML0774; Name=PGML0774; organism=Gossypium raimondii; type=genetic_marker; length=134bp
CAATCCCAAGTAATTCAAACCCCTACTCCAAGTTATCAAAAAAATAAAAT
AAAATCTTGAGAATGCAAACAATGTAATCTTATTTCAACCTAATCTTTTC
GTTTAAAATAATACATTCAGTGTTCCAAATACGC