PGML0739, PGML0739 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0739
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(GGGGAA)6
Primer 1PGML0739_F: ACATTGAGGAGGAGGTGACG
Primer 2PGML0739_R: TTCCAGTGTTTGTTTGGCTG
Product Length318
Publication[view all]
CommentBAC_ID=FITB6983.y1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:6040753..6041056 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:48271936..48272223 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018221.1chromosomeCM018221.1:53080112..53080399 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:56812767..56813084 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_08chromosomeD5_08:39724265..39724557 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_11chromosomeD5_11:32489853..32490152 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_10chromosomeD5_10:59835249..59835528 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_07chromosomeD5_07:23729454..23729747 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_07chromosomeD5_07:48567841..48568117 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_04chromosomeD5_04:7274441..7274751 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_08chromosomeD10_08:50006529..50006834 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_10chromosomeD10_10:42077571..42077870 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_03chromosomeD10_03:34010190..34010493 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_03chromosomeD10_03:32313533..32313826 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr3chromosomeDt_chr3:18805241..18805528 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr11chromosomeDt_chr11:60116530..60116833 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D03chromosomeD03:39459235..39459522 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D10chromosomeD10:5609423..5609726 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:51239291..51239578 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D12chromosomeGhir_D12:29152460..29152724 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D09chromosomeGhir_D09:35756528..35756786 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D05chromosomeGhir_D05:59086225..59086483 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D03chromosomeGhir_D03:45736777..45737035 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:28884410..28884666 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D11chromosomeGhir_D11:6817861..6818125 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D10chromosomeGhir_D10:6189626..6189929 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D09chromosomeGhir_D09:26308742..26309005 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D07chromosomeGhir_D07:56312725..56313012 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:84614982..84615240 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D03chromosomeD03:46680327..46680614 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:5821889..5822192 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:6000724..6001027 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:45484563..45484850 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D10chromosomeD10:6080802..6081105 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:48000526..48000813 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D05chromosomeGbar_D05:13125133..13125397 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D03chromosomeGbar_D03:44128861..44129148 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:104669813..104670065 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:64793208..64793472 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D12chromosomeGbar_D12:46965788..46966058 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D11chromosomeGbar_D11:6642404..6642668 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D07chromosomeGbar_D07:53451265..53451552 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:65511489..65511747 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:49281843..49282130 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D07chromosomeD07:54126768..54127055 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:48953124..48953411 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017632.1chromosomeCM017632.1:5789292..5789595 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017631.1chromosomeCM017631.1:25276721..25276990 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017629.1chromosomeCM017629.1:54022748..54023059 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:52250319..52250606 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017658.1chromosomeCM017658.1:5986221..5986520 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017655.1chromosomeCM017655.1:55008946..55009233 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:49277236..49277523 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017703.1chromosomeCM017703.1:46593635..46593918 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017707.1chromosomeCM017707.1:54138873..54139160 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D03chromosomeD03:47438150..47438437 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D10chromosomeD10:6026451..6026754 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:2552570..2552850 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:40079690..40079982 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr07chromosomeChr07:28503718..28504011 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr07chromosomeChr07:2905019..2905295 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr11chromosomeChr11:30443256..30443555 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:5584476..5584792 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:10389537..10389831 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr07chromosomeChr07:15445177..15445469 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr13chromosomeChr13:31606709..31607002 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr09chromosomeChr09:36816418..36816712 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr08chromosomeChr08:4535911..4536192 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr12chromosomeChr12:32900877..32901162 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:64195781..64196074 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:56699503..56699803 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:42865610..42865944 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:24075921..24076203 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:48080121..48080406 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:6752405..6752704 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:2914238..2914525 +Gossypium gossypioides (D6) genome ISU_v1n/a
Sequence
>PGML0739 ID=PGML0739; Name=PGML0739; organism=Gossypium raimondii; type=genetic_marker; length=318bp
ACATTGAGGAGGAGGTGACGCTCAGGCGACGGGAACTCCGATTGGAGGGA
ATTGAGTTTTTCTTGGGAGCGGGAACAATCGATTACGGTGTAGCCTCTCT
TGGAACAACCGATCAAGGATGGGGGAAGGGGAAGAGGAAAGGGAAGGGGA
AGGGGAAGGGGAAGGGGAAGGGAAGATTTGTGTTCCTTCTAATTTTCCTG
AAAATGTCTTACCGAATTAGAAAGGGTAAGACATTTTCCAAAATTAACGC
CTTCTTTTCCCGTGTTTTGTAATTGGTTTTACAGTAGGAAAATATTTTCA
GCCAAACAAACACTGGAA