PGML0729, PGML0729 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0729
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(CGATT)3
Primer 1PGML0729_F: TGGTCCATGTAAACGTAGCATT
Primer 2PGML0729_R: GGGATGAGCATTTGATCGAG
Product Length195
Publication[view all]
CommentBAC_ID=FITB7204.y1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:17912465..17912659 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:16887262..16887451 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:49224096..49224290 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:111325404..111325596 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:16359451..16359645 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr7chromosomeDt_chr7:14748717..14748911 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr10chromosomeDt_chr10:25386641..25386835 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:17238579..17238773 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:17467263..17467456 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:17024456..17024650 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:17476092..17476286 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:17261293..17261487 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:17173316..17173505 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:17071986..17072175 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:16956535..16956729 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:17423016..17423210 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:17107086..17107280 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:17835297..17835491 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:116411783..116411989 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:11166396..11166591 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:13001450..13001642 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:47143492..47143686 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:9385948..9386142 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:17138245..17138439 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:14103770..14103964 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr07chromosomeChr07:17025853..17026047 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Unplaced_6025025chromosomeUnplaced_6025025:1432..1626 +Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:13664379..13665206 +Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:22220374..22220569 +Gossypium stocksii (E1) genome NSF_v1n/a
Sequence
>PGML0729 ID=PGML0729; Name=PGML0729; organism=Gossypium raimondii; type=genetic_marker; length=195bp
TGGTCCATGTAAACGTAGCATTGAGTATATATACTAGGATTTGTTAACTC
GACTTGAAATTTTTTGACTCGATTCGATTCGATTTGATTTGAAAATTTTT
CAAATTGAGTTCAGTTGCTAAAATAGAATTCGCCAACTCAACTAACTCGA
AATTTTTTGACTCGATTCGACTCGGCTCGATCAAATGCTCATCCC