PGML0728, PGML0728 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0728
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(ATTT)3
Primer 1PGML0728_F: AGTGGAGGCAGAGGTCAAGA
Primer 2PGML0728_R: TGACATAACCATCACTTCGCA
Product Length279
Publication[view all]
CommentBAC_ID=FITB6947.y1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:64459272..64459556 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:62419247..62419524 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:65694359..65694642 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_08chromosomeD5_08:44722530..44722809 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_12chromosomeD5_12:11996..12279 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_01chromosomeD10_01:60422047..60422330 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_08chromosomeD10_08:16260377..16260656 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_05chromosomeD10_05:31830..32104 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_03chromosomeD10_03:61121262..61121541 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_01chromosomeD10_01:46220..46499 -Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold5492.1supercontigscaffold5492.1:15725..16003 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr10chromosomeDt_chr10:10313476..10313755 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold4767supercontigscaffold4767:136765..137049 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D05chromosomeD05:61915195..61915473 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:62892126..62892403 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:63918443..63918721 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:64683935..64684219 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:64097466..64097744 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:62300699..62300977 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Scaffold1400supercontigScaffold1400:85825..86102 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:66502388..66502665 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:63940590..63940875 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017627.1chromosomeCM017627.1:62673596..62673875 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:65839159..65839436 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D01chromosomeD01:65194265..65194549 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D05chromosomeD05:66460548..66460826 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:63184422..63184705 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:45611293..45611572 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr01chromosomeChr01:52405586..52405867 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr05chromosomeChr05:57121003..57121281 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr05chromosomeChr05:57123663..57123936 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:81804373..81804652 +Gossypium anomalum (B1) genome NSF_v1n/a
B_03chromosomeB_03:1765340..1765619 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:58212478..58212753 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr02chromosomeChr02:61382202..61382477 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr09chromosomeChr09:63074689..63074965 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:49491274..49491553 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
E08chromosomeE08:97301982..97302261 +Gossypium stocksii (E1) genome NSF_v1n/a
E13chromosomeE13:132476..132755 -Gossypium stocksii (E1) genome NSF_v1n/a
F08chromosomeF08:84740923..84741201 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>PGML0728 ID=PGML0728; Name=PGML0728; organism=Gossypium raimondii; type=genetic_marker; length=279bp
AGTGGAGGCAGAGGTCAAGATATGAAATATGATCGAGAAAGCTCCGGAGG
CCGTGGCGGCAGCAAGGACAAAATTGATGCTCTTGGTCGACTCTTGTAAG
CAGCGTTGGAAATTAAAACATTCTATCAATTCTTTTTATTTATTTATTTT
ATATATGATTAAATTGATTTTATTCATTATTGTTTATTTTTTTTTTGGGA
TTAATCTCTTTTAGGACACGAATTTTGCGACATATGGCTACTGAACTGAA
TTTGAATATGCGAAGTGATGGTTATGTCA