PGML0724, PGML0724 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0724
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TTAAA)3
Primer 1PGML0724_F: AAATAATGACTCAAGGCTCTCTTTA
Primer 2PGML0724_R: CTTTGGTGGTTGAGCAGTGA
Product Length294
Publication[view all]
CommentBAC_ID=FITB7202.y1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D5_12chromosomeD5_12:18038096..18038391 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Ghir_D04chromosomeGhir_D04:13222858..13223083 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:61225651..61225876 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D10chromosomeGhir_D10:29185661..29185890 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D05chromosomeGhir_D05:35581373..35581596 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:84890402..84890627 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:8440532..8440756 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Gbar_D04chromosomeGbar_D04:12699027..12699252 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:75891322..75891547 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:99358034..99358258 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D03chromosomeGbar_D03:42299780..42300004 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:8227850..8228075 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
CM017623.1chromosomeCM017623.1:18681872..18682208 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
Chr12chromosomeChr12:83243404..83243736 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:39747927..39748222 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr03chromosomeChr03:11019279..11019611 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_07chromosomeChr_07:31129525..31129814 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr_09chromosomeChr_09:48500132..48500485 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr03chromosomeChr03:11441708..11442040 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:35159987..35160325 -Gossypium aridum (D4) genome ISU_v1n/a
Sequence
>PGML0724 ID=PGML0724; Name=PGML0724; organism=Gossypium raimondii; type=genetic_marker; length=294bp
AAATAATGACTCAAGGCTCTCTTTATATAGGGAGAGTTAGAGAGTCAACT
ATAATTAAACTTAATCACTTTAATATTAAATTAATATAATATTTATCAAG
ATAGATATTAATTAATTTAATATTAAGTAATCACTTTAATACTAAATTAA
TAAAATACTATTTAGATAACTATTAAATTAAATTAAATATTAAACTATTA
AAATAATATTATTTCTGAAATAATTAATCTAAAATCTAATTCTTTGGTAG
AGTCCTAGTAGGAGTGTAACTCTTTCACTGCTCAACCACCAAAG