PGML0723, PGML0723 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0723
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(ATTTC)3
Primer 1PGML0723_F: GCTAGGTCAGGATCTGTCGC
Primer 2PGML0723_R: GCGGCGTGTACCCTACTATT
Product Length274
Publication[view all]
CommentBAC_ID=FITB7162.y1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:19616921..19617197 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A10chromosomeA10:80797957..80798228 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:18371137..18371413 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018211.1chromosomeCM018211.1:80624670..80624942 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:43956140..43956413 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:100290744..100291015 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:45983428..45983703 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:37974714..37974985 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr11chromosomeDt_chr11:17671211..17671487 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr11chromosomeAt_chr11:24041915..24042186 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:18340584..18340860 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:71355049..71355320 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:18786257..18786533 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:84530446..84530717 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:18307553..18307829 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:86059203..86059474 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:18941478..18941754 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:84714735..84715006 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:18897373..18897649 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:79840338..79840609 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:18203673..18203949 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:80777062..80777334 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:18661122..18661398 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:82592979..82593251 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:18571246..18571522 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:82082921..82083193 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:18911870..18912146 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:88831960..88832231 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:18735894..18736170 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:83783908..83784180 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:19035149..19035425 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:87635571..87635842 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:51233552..51233823 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:28997545..28997816 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:18187824..18188097 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:75927426..75927707 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:18465469..18465745 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:16214628..16214903 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:13455154..13455429 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:18603670..18603946 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:14861431..14861707 +Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:11627330..11627606 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:14632620..14632897 +Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:81840115..81840391 -Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:23303046..23303317 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:113077827..113078098 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0723 ID=PGML0723; Name=PGML0723; organism=Gossypium raimondii; type=genetic_marker; length=274bp
GCTAGGTCAGGATCTGTCGCCTTTGCTGTTGAACTGGAAGCTTGTTGTTG
ATGAACAATTCGTAGAAATATTTATGGAATTCATAATTTCATTTCATTTC
TAAATAAAAAATATAGCCCGAGTAAATTCATTGAAATGGTTTAGTAATAC
AGAGTCGTAGTCACTTTTCTTGAACAAAATTACTTGCTATAATTTTCACT
CGTTTATTATATACAGTTCTAAGAGCAACTTGTTCTGCGTGACATATAAA
ATATAATAGTAGGGTACACGCCGC