PGML0711, PGML0711 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0711
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TTG)6
Primer 1PGML0711_F: TGCAGAAGCAGAAGCAGAAA
Primer 2PGML0711_R: GAGAAATGCCTGCAGAGACC
Product Length267
Publication[view all]
CommentBAC_ID=FITB9879.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:8277862..8278128 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A02chromosomeA02:8628024..8628283 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:7517560..7517823 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018203.1chromosomeCM018203.1:7761920..7762179 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:56344985..56345251 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_03chromosomeKI_03:5383305..5383565 -Gossypioides kirkii genome ISU_v3n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:8784885..8785144 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_03chromosomeD10_03:57742812..57743078 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016616.1chromosomeCM016616.1:142952054..142952313 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold2214.1supercontigscaffold2214.1:82748..83007 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr5chromosomeDt_chr5:52655801..52656067 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:8095747..8096013 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A02chromosomeA02:7960155..7960414 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:7878360..7878626 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A02chromosomeGhir_A02:7916505..7916764 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:7568113..7568379 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:7629541..7629800 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:7914230..7914496 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:8179085..8179344 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:7857041..7857307 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A02chromosomeA02:8157709..8157968 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:8023098..8023361 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A02chromosomeGbar_A02:7868246..7868505 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:7525797..7526060 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A02chromosomeA02:7812702..7812961 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:8299481..8299747 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017611.1chromosomeCM017611.1:7803358..7803617 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:8547764..8548030 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017637.1chromosomeCM017637.1:8172016..8172275 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:7936484..7936747 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017689.1chromosomeCM017689.1:7929066..7929325 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:8141804..8142070 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A02chromosomeA02:8245148..8245407 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:123251491..123251750 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:121999965..122000224 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr03chromosomeChr03:7055225..7055491 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr05chromosomeChr05:7847869..7848135 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr05chromosomechr05:5849974..5850240 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_05chromosomeChr_05:5959487..5959746 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:7966141..7966407 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:5878226..5878485 -Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:4732506..4732765 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr05chromosomeChr05:6650507..6650766 -Gossypium lobatum (D7) genome ISU_v1n/a
E03chromosomeE03:10465363..10465622 -Gossypium stocksii (E1) genome NSF_v1n/a
F03chromosomeF03:8000827..8001086 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr03chromosomeChr03:193325787..193326046 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0711 ID=PGML0711; Name=PGML0711; organism=Gossypium raimondii; type=genetic_marker; length=267bp
TGCAGAAGCAGAAGCAGAAAGTAAACGATTCTCAGAGTCAGAGGCTAGAA
ATGGGCCATTAATTGCTGGTGGGGTTGCTGGAGGGGTTGCTAGTTGTGCT
TTAGTGGTTGCCATTGTTGTTGTTGTTGTTGTAAAGAAAAAGAAGAAAAC
CGGAAAAACTCTCAGTTCGGTGATAACGTATGGCAGTTCACATTCATCGT
CAACCGGAAAAACCTTTCCCGGTAGCCAGATTTCGAACCTTGCTGCCGGT
CTCTGCAGGCATTTCTC