PGML0701, PGML0701 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0701
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(GT)7
Primer 1PGML0701_F: TATTGAAGGTCGAGAGCCAA
Primer 2PGML0701_R: TTATGGCAAACCAAACTCCC
Product Length218
Publication[view all]
CommentBAC_ID=FITB9605.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D03chromosomeD03:34692229..34692446 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018217.1chromosomeCM018217.1:35370089..35370304 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018204.1chromosomeCM018204.1:22915310..22915527 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_02chromosomeD5_02:29354376..29354590 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:89554792..89555009 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_02chromosomeD10_02:33881853..33882066 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr3chromosomeDt_chr3:16788132..16788349 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D03chromosomeD03:28826483..28826700 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D03chromosomeGhir_D03:34750243..34750460 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D03chromosomeD03:36355155..36355372 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:35688763..35688980 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:35114363..35114580 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D03chromosomeGbar_D03:33784059..33784274 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A03chromosomeGbar_A03:22833473..22833690 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D03chromosomeD03:36374666..36374881 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A03chromosomeA03:22864923..22865140 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:23246271..23246488 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017651.1chromosomeCM017651.1:38624230..38624445 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017638.1chromosomeCM017638.1:23873372..23873589 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017703.1chromosomeCM017703.1:36309457..36309672 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017690.1chromosomeCM017690.1:23045782..23045999 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D03chromosomeD03:36762613..36762830 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:17602880..17603097 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:95515387..95515604 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr02chromosomeChr02:31440237..31440454 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_04chromosomeB_04:21609793..21610006 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr03chromosomeChr03:32953549..32953766 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:5521671..5522547 +Gossypium armourianum (D2-1) genome ISU_v1n/a
chr03chromosomechr03:13349319..13349532 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:5403421..5403637 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr_03chromosomeChr_03:10766479..10766692 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr03chromosomeChr03:34771864..34772079 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr03chromosomeChr03:11149100..11149315 -Gossypium aridum (D4) genome ISU_v1n/a
Chr03chromosomeChr03:9662671..9662886 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr03chromosomeChr03:11878194..11878565 -Gossypium lobatum (D7) genome ISU_v1n/a
F02chromosomeF02:56046147..56046364 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>PGML0701 ID=PGML0701; Name=PGML0701; organism=Gossypium raimondii; type=genetic_marker; length=218bp
TATTGAAGGTCGAGAGCCAATTGTATATCGTGTTAGAGTTATGTATTCAT
TCGCATTGTCCTATATACATAGTTCCGATCTAGTCCTTGTATATGACATG
CTCGAGCACTATTTACTTTTATTTTCTTGTGTGTGTGTGTGTTTTATTTT
GTTTCTTTTTATCTTGTTGCTTGAGGACAAACAATGACTTAAGTGTTGGG
GAGTTTGGTTTGCCATAA