PGML0697, PGML0697 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0697
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(CGTTTT)3
Primer 1PGML0697_F: CTGCTGGCTCTTGTACCCTT
Primer 2PGML0697_R: TTTCTCAGTGCCATGCGTAG
Product Length208
Publication[view all]
CommentBAC_ID=FITB9955.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:62898440..62898641 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A06chromosomeA06:115338102..115338303 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:57765729..57765930 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018207.1chromosomeCM018207.1:111113144..111113345 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:55981556..55981763 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_06chromosomeKI_06:53135478..53135685 -Gossypioides kirkii genome ISU_v3n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:124479953..124480154 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:5218520..5218721 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:8652323..8652530 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold2542.1supercontigscaffold2542.1:191404..191605 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:58934654..58934855 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A06chromosomeA06:98229708..98229909 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:61468808..61469009 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:118566937..118567138 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:60406660..60406861 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:121280225..121280426 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:60738443..60738644 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:120577799..120578000 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:57930726..57930927 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A06chromosomeA06:116440646..116440847 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:57931786..57931987 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:110132244..110132445 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:57965803..57966004 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A06chromosomeA06:113207405..113207606 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:58354169..58354370 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017615.1chromosomeCM017615.1:116136119..116136320 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:61345379..61345580 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:121638804..121639005 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:58431756..58431963 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017693.1chromosomeCM017693.1:114406256..114406457 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:61477414..61477615 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:122753302..122753503 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:122471588..122471789 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:124078569..124078770 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:55615424..55615631 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:57859361..57859562 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:44867591..44868178 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:40115452..40115653 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:59633282..59633483 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:37988831..37989032 +Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:32708441..32708642 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10chromosomeChr10:39038647..39038848 +Gossypium lobatum (D7) genome ISU_v1n/a
E06chromosomeE06:7632298..7632505 -Gossypium stocksii (E1) genome NSF_v1n/a
Chr06chromosomeChr06:8124537..8124744 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0697 ID=PGML0697; Name=PGML0697; organism=Gossypium raimondii; type=genetic_marker; length=208bp
CTGCTGGCTCTTGTACCCTTACCTCTAAAACATTTGTAAATGATGGATCA
TTTGGTCTTGATGTTTGATCCTTCATATCCTCAACAGGAATGTTTTCATT
TTCATTTTGATTTTCGTTTTCGTTTTCGTTTTGTAGCCACCTGTCATATA
AATCATCATCATGTGACTCAACACCACCTTGTTCTGTTCTACGCATGGCA
CTGAGAAA