PGML0696, PGML0696 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0696
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(ATA)9
Primer 1PGML0696_F: TTTCAGCATCAAATGCATGG
Primer 2PGML0696_R: CCCAGATTATCCAACCATAACTC
Product Length198
Publication[view all]
CommentBAC_ID=FITB9851.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:52996152..52996346 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A10chromosomeA10:94862968..94863139 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:50727487..50727675 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018211.1chromosomeCM018211.1:92733330..92733504 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:14085174..14085370 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
CM016623.1chromosomeCM016623.1:119221824..119221995 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr11chromosomeDt_chr11:43555342..43555536 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr11chromosomeAt_chr11:9717743..9717914 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:50456864..50457058 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:84481326..84481497 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:53001919..53002113 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:98333897..98334068 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:53097125..53097319 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:99390614..99390785 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:51697832..51698026 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:98439917..98440088 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:50002812..50003006 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:93539886..93540057 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:50720827..50721015 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:92875391..92875565 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:51755566..51755754 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:94616297..94616471 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:94286357..94286528 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017632.1chromosomeCM017632.1:51161888..51162094 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:52828511..52828699 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:101858266..101858437 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:51945442..51945630 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:95997102..95997273 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:53046603..53046797 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:101438404..101438575 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:108097560..108097731 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:48252503..48252700 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr11chromosomeChr11:49759880..49760083 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_07chromosomeChr_07:42576187..42576378 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:51082152..51082337 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:38944017..38944220 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:27583013..27583198 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:41767958..41768174 -Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:21971489..21971682 -Gossypium stocksii (E1) genome NSF_v1n/a
Sequence
>PGML0696 ID=PGML0696; Name=PGML0696; organism=Gossypium raimondii; type=genetic_marker; length=198bp
TTTCAGCATCAAATGCATGGATGGGATAATAATAATAATAATAATAATAA
TATAAGATCAATTTCCATAAATGTAACAAGATAACTGTCGATAGAAAAGT
TATAAACTTGCCCAAAATAAATGTCCTGAACTATGAGTATGAAAATGCAC
CTACATTGCTTATAATACCAAAAATGAGTTATGGTTGGATAATCTGGG