PGML0669, PGML0669 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0669
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(ATTT)3
Primer 1PGML0669_F: TGTACATACATAATTGATTTGTCCTTT
Primer 2PGML0669_R: CCGTAAGTTAGGGTACGACCTTT
Product Length236
Publication[view all]
CommentBAC_ID=FITB10420.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:37053062..37053301 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D05chromosomeD05:37070244..37070483 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:35626863..35627105 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018219.1chromosomeCM018219.1:35644044..35644275 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:33765779..33766014 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_05chromosomeD5_05:33785754..33785984 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_05chromosomeD10_05:23288182..23288421 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr9chromosomeDt_chr9:24244774..24245013 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr9chromosomeDt_chr9:24227592..24227831 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:36116356..36116595 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D05chromosomeD05:36134945..36135184 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:36358040..36358279 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D05chromosomeGhir_D05:36375218..36375457 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:35500888..35501127 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:35518242..35518481 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:36110046..36110284 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:36127224..36127463 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:35797077..35797316 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D05chromosomeD05:35814259..35814498 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:36506441..36506683 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D05chromosomeGbar_D05:36523622..36523853 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:35991959..35992197 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D05chromosomeD05:36009145..36009376 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:35926650..35926893 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017627.1chromosomeCM017627.1:35943841..35944080 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:36428084..36428323 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017653.1chromosomeCM017653.1:36449919..36450154 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017653.1chromosomeCM017653.1:36496540..36496775 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:36013288..36013530 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017705.1chromosomeCM017705.1:36030473..36030712 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:36917306..36917545 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D05chromosomeD05:36934488..36934727 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:33908302..33908537 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr05chromosomeChr05:33928050..33928496 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:34725962..34726214 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr09chromosomeChr09:35909991..35910222 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:35878708..35878936 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:8134975..8135499 +Gossypium lobatum (D7) genome ISU_v1n/a
Sequence
>PGML0669 ID=PGML0669; Name=PGML0669; organism=Gossypium raimondii; type=genetic_marker; length=236bp
TGTACATACATAATTGATTTGTCCTTTCTTTATTTATTTATTTGTCTTAT
TTTTATTTTTGCTCGTATTATTTATAGTTACGTTATTGCATTTATTATTC
TATTATGCATATTAACACCGTACTTTGTTTTTACCAATTCGTGTTACATT
AATTTTACTTGATACATAAATGATGACTTTAAAATAAATAACACTCCGTA
TTTTGAGATTCGAAAAGGTCGTACCCTAACTTACGG