PGML0661, PGML0661 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0661
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(CAT)6
Primer 1PGML0661_F: GCATTTGCAATTTAAAGGGA
Primer 2PGML0661_R: CCGAGAACATGTCCATCAAA
Product Length219
Publication[view all]
CommentBAC_ID=FITB10666.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018221.1chromosomeCM018221.1:26380119..26380340 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018221.1chromosomeCM018221.1:37256228..37256456 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018210.1chromosomeCM018210.1:62314321..62314557 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:24766813..24767031 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_06chromosomeD10_06:31207507..31207737 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_07chromosomeD10_07:28445554..28445772 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:108798900..108799122 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr1chromosomeDt_chr1:60543417..60543635 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:26129136..26129354 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D07chromosomeD07:36959765..36959984 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:26777245..26777463 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D07chromosomeGhir_D07:37716061..37716280 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:26118718..26118936 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:37591691..37591910 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:26809881..26810099 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:37983259..37983478 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:26254203..26254421 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:26568268..26568489 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:26656830..26657051 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D07chromosomeD07:38303084..38303312 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:26804812..26805030 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017613.1chromosomeCM017613.1:15276938..15277159 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017618.1chromosomeCM017618.1:63968830..63969066 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:27052184..27052402 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:26876614..26876835 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017707.1chromosomeCM017707.1:37873958..37874192 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:27086172..27086390 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D07chromosomeD07:38416661..38416880 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:27481074..27481292 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_07chromosomeB_07:36565601..36565814 +Gossypium anomalum (B1) genome NSF_v1n/a
B_13chromosomeB_13:75653985..75654210 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr01chromosomeChr01:26740083..26740301 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr11chromosomeChr11:4484428..4484649 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr01chromosomeChr01:37335075..37335324 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_01chromosomeChr_01:20519944..20520162 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:25967341..25967559 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:21134521..21134739 +Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:17299850..17300068 +Gossypium gossypioides (D6) genome ISU_v1n/a
E07chromosomeE07:50297498..50297714 -Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:78329387..78329612 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>PGML0661 ID=PGML0661; Name=PGML0661; organism=Gossypium raimondii; type=genetic_marker; length=219bp
GCATTTGCAATTTAAAGGGAATTCATTAAATCGGAAGCTATAGCATCCCT
TGTTAATTCCATTTCAAAACCACTTGAATTGTTTGATTCACCACAACCAT
CATCATCATCATCATTTTCTCCATCATGCACAGATTCTAGATCAATAATA
TTCTCATATGCCCTATTAATATTTTCGTATTCCATAAAATCTACATCATT
TTGATGGACATGTTCTCGG