PGML0659, PGML0659 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0659
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(ACA)6
Primer 1PGML0659_F: CCATGTTGCAAGACATGATTC
Primer 2PGML0659_R: TGATAACCTAGCCATTAACGAAA
Product Length195
Publication[view all]
CommentBAC_ID=FITB10545.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:45840147..45840340 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A10chromosomeA10:26410089..26410278 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:43881583..43881776 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018211.1chromosomeCM018211.1:25550292..25550481 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:20866722..20866916 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:36956631..36956820 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:21312384..21312576 -Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr11chromosomeAt_chr11:84213667..84213856 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr11chromosomeDt_chr11:36505494..36505687 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:43129820..43130013 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:23695432..23695621 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Scaffold3250supercontigScaffold3250:47837..48026 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D10chromosomeGhir_D10:45912495..45912688 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:45848133..45848326 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:25442600..25442790 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:45004991..45005184 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:25555317..25555506 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:43553727..43553920 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:26408744..26408933 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:43497924..43498117 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:25848692..25848881 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:44833365..44833558 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:25704077..25704266 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:43744535..43744728 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:25745962..25746148 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:45654616..45654809 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:26795732..26795921 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:44943653..44943846 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:25962055..25962241 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:45770668..45770861 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:26590593..26590782 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:94629033..94629222 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:87973459..87973649 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:41589625..41589819 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr11chromosomeChr11:22997383..22997576 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:35122397..35122588 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:28531371..28531563 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:44146919..44147115 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:30766464..30766657 +Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:23790448..23790632 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:30790551..30790741 +Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:34787241..34787430 +Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:67098302..67098490 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>PGML0659 ID=PGML0659; Name=PGML0659; organism=Gossypium raimondii; type=genetic_marker; length=195bp
CCATGTTGCAAGACATGATTCATCCACAACAACAACAACAACAGCAACTT
TCCATTGTAATTCTCTCATTTCTTCTTGAATGTATTTTTTTTCCTTTGCA
TTTTATTAATGTTTTAGAAAATCATAATATTTCTTTTGTTTGATGTGTAT
TCAAAATCATAACCAAGATTCTTTTCGTTAATGGCTAGGTTATCA