PGML0653, PGML0653 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0653
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(GCTTTT)4
Primer 1PGML0653_F: GTGTTCCTCCACCGATCAAT
Primer 2PGML0653_R: TGGTCCATATTAGTGTTTGAATTTG
Product Length249
Publication[view all]
CommentBAC_ID=FITB2256.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:919901..920150 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:875005..875253 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:62156126..62156374 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
At_chr1chromosomeAt_chr1:106057716..106057965 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:897688..897937 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:915674..915923 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:839955..840204 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:915042..915291 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:919632..919881 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:882621..882869 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:829053..829301 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:960662..960910 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:1091863..1092111 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:676254..676502 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:935017..935266 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:873189..873437 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr05chromosomeChr05:895855..896109 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr05chromosomechr05:820407..820662 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr05chromosomeChr05:979289..979562 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:748760..749034 -Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:749225..750013 -Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:653170..653443 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr05chromosomeChr05:824531..824808 -Gossypium lobatum (D7) genome ISU_v1n/a
Sequence
>PGML0653 ID=PGML0653; Name=PGML0653; organism=Gossypium raimondii; type=genetic_marker; length=249bp
GTGTTCCTCCACCGATCAATAACGCCTCATTGCTTTTGCTTTTGCTTTTG
GATAAAAGGTAACTTCTTTAAATTTCTTTTGTCCACATTACTTTTAGAAT
CTTTTTCATTCTAGATTAATGTGAAGATCACTTAAAAATGATAATATTTA
TAAAAAATTAAGTGATAACATGACGAAACTAAGAGTATCACGTCATCGAA
TATACTAAAATTGAGAAAATTTGTCAAATTCAAACACTAATATGGACCA