PGML0652, PGML0652 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0652
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TTTAA)3
Primer 1PGML0652_F: GTTTCCCAAATTCAAGCAGC
Primer 2PGML0652_R: AATCTCAAGTAGCCGCACCT
Product Length218
Publication[view all]
CommentBAC_ID=FITB2000.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:25539172..25539389 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:24133511..24133728 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:27439294..27439510 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:22874141..22874357 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:27900468..27900684 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:37538688..37538905 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016618.1chromosomeCM016618.1:82540160..82540361 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:46519980..46520197 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:24710734..24710951 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:24852695..24852912 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:24203012..24203229 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:24687189..24687406 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:24568577..24568794 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:24588647..24588864 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:26149976..26150192 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:24409301..24409518 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:27806744..27806960 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:27753057..27753273 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017627.1chromosomeCM017627.1:24208510..24208727 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:24797863..24798080 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:28105531..28105747 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:24470756..24470973 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:27496915..27497131 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:25208815..25209032 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:28307479..28307695 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:22943061..22943278 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:58227493..58227708 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:23549799..23550016 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:20855992..20856187 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:19376798..19377015 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:24190030..24190247 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:19412715..19412937 +Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:17137329..17137553 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:19992666..19992883 +Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:30591735..30591950 +Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:24369034..24369251 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr05chromosomeChr05:100911490..100911707 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0652 ID=PGML0652; Name=PGML0652; organism=Gossypium raimondii; type=genetic_marker; length=218bp
GTTTCCCAAATTCAAGCAGCCGGCAACTGGAAAATTTGGCTTTTTCCACC
ACTGAATGATTATAAAAGTGGATTTAGTTGAAAATGAAGATAAATTAATT
ATTTCTCTATGGTTAATTAATTGTTGGACTACTGTATCGTATTCATTAAA
CTAACATCTGATTTAATTTAATTTAACCCCAATTGAAAGGAATTTATTAG
GTGCGGCTACTTGAGATT