PGML0646, PGML0646 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0646
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(CAAT)3
Primer 1PGML0646_F: AAGCCATTTCCAACACCAAC
Primer 2PGML0646_R: TGGTTGTAAGGTGCCATGAA
Product Length153
Publication[view all]
CommentBAC_ID=FITB2093.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A02chromosomeA02:62368884..62369036 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018217.1chromosomeCM018217.1:14951821..14951973 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_02chromosomeD5_02:14158910..14159061 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_02chromosomeD10_02:15048132..15048284 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_02chromosomeD10_02:15055693..15055845 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr3chromosomeDt_chr3:32067264..32067416 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold3920_D03supercontigscaffold3920_D03:4488402..4488554 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D03chromosomeGhir_D03:20402112..20402264 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D03chromosomeD03:21365896..21366048 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:21513864..21514016 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:20322902..20323054 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D03chromosomeGbar_D03:14979361..14979513 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D03chromosomeD03:21207392..21207544 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017625.1chromosomeCM017625.1:14905691..14905843 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017703.1chromosomeCM017703.1:15156445..15156597 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D03chromosomeD03:15342825..15342977 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:14721866..14722018 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_04chromosomeB_04:51530048..51530200 -Gossypium anomalum (B1) genome NSF_v1n/a
B_04chromosomeB_04:51538798..51538949 -Gossypium anomalum (B1) genome NSF_v1n/a
chr02chromosomechr02:4527884..4528036 -Gossypium armourianum (D2-1) genome ISU_v1n/a
chr02chromosomechr02:4519970..4520122 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:4394734..4394886 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr_02chromosomeChr_02:4387558..4387710 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr03chromosomeChr03:15422547..15422696 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:5376164..5376316 -Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:3784239..3784391 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr02chromosomeChr02:5112873..5113025 -Gossypium lobatum (D7) genome ISU_v1n/a
E01chromosomeE01:34817578..34817730 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr02chromosomeChr02:96664112..96664264 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0646 ID=PGML0646; Name=PGML0646; organism=Gossypium raimondii; type=genetic_marker; length=153bp
AAGCCATTTCCAACACCAACACATGCATTCACCTAAAGACCTTTAGTGCA
CATTCTCAAAGCATCTAAACCTTACCAAATCATACATATAATGATAAATT
CAATACTCCCAAATCAATCAATCAATACGCCATTTCATGGCACCTTACAA
CCA