PGML0644, PGML0644 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0644
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TTTTG)3
Primer 1PGML0644_F: AGGAATTGTTTAGCCGAGTTT
Primer 2PGML0644_R: TCACTGCATTGTTGACATGG
Product Length295
Publication[view all]
CommentBAC_ID=FITB2213.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:38068014..38068308 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:36593865..36594157 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:34666678..34666971 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_05chromosomeD10_05:22352917..22353213 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr9chromosomeDt_chr9:26504081..26504375 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold35146supercontigscaffold35146:316..610 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D05chromosomeD05:37078672..37078966 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:37359367..37359656 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:36495018..36495312 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:37098730..37099023 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:36733984..36734278 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:37473263..37473555 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:36921511..36921804 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:36860917..36861210 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:37461757..37462051 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:36959827..36960120 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:37922389..37922683 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:34808266..34808560 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:35723918..35724210 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_09chromosomeChr_09:29153792..29154198 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:36948735..36949028 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Sequence
>PGML0644 ID=PGML0644; Name=PGML0644; organism=Gossypium raimondii; type=genetic_marker; length=295bp
AGGAATTGTTTAGCCGAGTTTTTAGGTTCATATTTTATTTTGGTTTAAGT
TTTATTATAAGCAAGTTTTACTCAAATTAGGCTTATGTGATTTGATTCTT
AAGCTATATTATTTTTTTCATTTTGGTACTTCAAATTTTTTTTTGTTTTG
TTTTGGAATCTACACGATTTTTCGTTTATAAATTTTAGTCTAAAAAGTTA
ATTATGTTTAAAAAAAAAAGAAGAAGGTGCTTCACCTAATCAATGAGAAC
ATCCCCACATGTTTGTCCTTTTTTTCCATGTCAACAATGCAGTGA