PGML0643, PGML0643 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0643
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AT)9
Primer 1PGML0643_F: AAGACGTTTCGATGCTTTGG
Primer 2PGML0643_R: CGCTTAGCTTTAACCCTCCC
Product Length259
Publication[view all]
CommentBAC_ID=FITB1973.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:26626528..26626776 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A09chromosomeA09:47836066..47836472 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:25240638..25240853 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018210.1chromosomeCM018210.1:44429377..44429787 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:20080184..20080438 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_09chromosomeD10_09:23871141..23871397 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016622.1chromosomeCM016622.1:42785234..42785493 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr6chromosomeDt_chr6:24773541..24773789 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr6chromosomeAt_chr6:36586611..36587017 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:25458874..25459122 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A09chromosomeA09:42895929..42896335 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:27353993..27354241 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:48377791..48378197 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A09chromosomeA09:50458105..50458511 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:26861102..26861350 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:49779565..49779971 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:25233056..25233304 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A09chromosomeA09:46764880..46765286 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D09chromosomeGbar_D09:25839523..25839738 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:45333540..45333950 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:28704312..28704527 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A09chromosomeA09:46469966..46470376 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:26228633..26228883 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017618.1chromosomeCM017618.1:45743811..45744219 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:27341585..27341834 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017644.1chromosomeCM017644.1:48524703..48525109 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:26719878..26720093 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:28307503..28307751 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A09chromosomeA09:50891153..50891559 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:48873220..48873632 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:52557672..52558097 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr09chromosomeChr09:25308742..25309000 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr06chromosomeChr06:23433304..23433535 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_06chromosomeChr_06:13953287..13953553 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:26711094..26711354 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:14962003..14962263 -Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:13370919..13371724 -Gossypium lobatum (D7) genome ISU_v1n/a
F09chromosomeF09:39833137..39833392 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr09chromosomeChr09:63073220..63073484 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0643 ID=PGML0643; Name=PGML0643; organism=Gossypium raimondii; type=genetic_marker; length=259bp
AAGACGTTTCGATGCTTTGGCTTGTCCAACTCGACATGGGTAATTTTGTC
ATTACTAAAATGGGGTAAGGTTAAAAAGTAAAAATATTGTCAATTTTAAG
GACGGTTATATAATTAAGTGTATAATACTAATTAAGATATATATATATAT
ATATTAAAAAGGTAAAAATTTCAAAAAATAAATATAAAATTGAAGACAGG
TTGAGTAAGATGAGTGTTAAGAAAATAATATCCAAATTGGGGAGGGTTAA
AGCTAAGCG