PGML0642, PGML0642 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0642
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TAATT)3
Primer 1PGML0642_F: AACATAAATTTGTTTGAGAAATGGT
Primer 2PGML0642_R: TGAAGCACTTATTTACGATTTGGA
Product Length253
Publication[view all]
CommentBAC_ID=FITB2260.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
scaffold_986supercontigscaffold_986:34495..34746 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D10chromosomeD10:4776244..4776495 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D10chromosomeD10:4741176..4741426 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:4465664..4465917 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:58038355..58038607 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_10chromosomeD10_10:59723499..59723752 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D10chromosomeD10:4586503..4586754 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D10chromosomeD10:4602292..4602543 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:4727797..4728048 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:4812483..4812734 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:4542218..4542471 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
CM017632.1chromosomeCM017632.1:4565402..4565654 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:4675321..4675574 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:4627901..4628153 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:4750834..4751085 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:4354734..4354990 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Sequence
>PGML0642 ID=PGML0642; Name=PGML0642; organism=Gossypium raimondii; type=genetic_marker; length=253bp
AACATAAATTTGTTTGAGAAATGGTATTAATATGTGTCCTTAAGAAAAAC
CTAGATTTTAAACTTAACAATTTAATATTCATTAATTTAATTTAATTCAA
ATAAGTAAAGTATTAAAATAAAGAGAAATTATTTAAAATCAACTTTATAT
TTGAGGTACAAAAATTATAATTTAAAAAAAACATGGAATAACTTAAAAAT
TAAAAGGGGATGAGTAAAAAAATAATTTATCCAAATCGTAAATAAGTGCT
TCA