PGML0641, PGML0641 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0641
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TATT)5
Primer 1PGML0641_F: TTGGAAGTAGCTTGCTTGATGA
Primer 2PGML0641_R: TTTGCACCACAATTCACACA
Product Length187
Publication[view all]
CommentBAC_ID=FITB2244.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D03chromosomeD03:49672196..49672382 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A03chromosomeA03:2522489..2522676 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018217.1chromosomeCM018217.1:49856570..49856752 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018204.1chromosomeCM018204.1:2987776..2987963 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:52983765..52983945 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_02chromosomeD5_02:43377095..43377280 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:109587756..109587943 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_02chromosomeD10_02:47778117..47778303 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016615.1chromosomeCM016615.1:108586028..108586218 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold290.1supercontigscaffold290.1:538418..538604 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr5chromosomeAt_chr5:1771559..1771746 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D03chromosomeD03:43483630..43483816 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A03chromosomeA03:2007739..2007926 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D03chromosomeGhir_D03:49368438..49368624 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A03chromosomeGhir_A03:3734942..3735129 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D03chromosomeD03:50647382..50647568 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:3320290..3320477 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:50344079..50344265 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:3581863..3582050 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:49622148..49622334 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A03chromosomeA03:3032250..3032437 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D03chromosomeGbar_D03:48247321..48247503 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A03chromosomeGbar_A03:2979640..2979827 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D03chromosomeD03:50599326..50599508 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A03chromosomeA03:3080471..3080658 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017625.1chromosomeCM017625.1:49052562..49052748 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017612.1chromosomeCM017612.1:3310894..3311081 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017651.1chromosomeCM017651.1:53214606..53214796 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017638.1chromosomeCM017638.1:3614225..3614412 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017703.1chromosomeCM017703.1:50721623..50721805 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017690.1chromosomeCM017690.1:3213481..3213668 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D03chromosomeD03:51617567..51617753 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A03chromosomeA03:3642214..3642401 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:2769797..2770001 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:115411345..115411532 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:52972826..52973006 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:45467035..45467221 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_04chromosomeB_04:3474293..3474477 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr03chromosomeChr03:47218819..47218997 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr03chromosomeChr03:49076493..49076679 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr03chromosomeChr03:23713776..23713962 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr03chromosomeChr03:29720761..29720946 +Gossypium lobatum (D7) genome ISU_v1n/a
E02chromosomeE02:84092716..84092901 +Gossypium stocksii (E1) genome NSF_v1n/a
F02chromosomeF02:73375327..73375521 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr02chromosomeChr02:4187427..4187614 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0641 ID=PGML0641; Name=PGML0641; organism=Gossypium raimondii; type=genetic_marker; length=187bp
TTGGAAGTAGCTTGCTTGATGATAAAGTTGGATTATTTATTTATTTATTT
ATTGTGAGACAAATTGTTTTATTCTTTACCCTTTTATGGTCAAAGAGAAT
CATTTGAGAACTTGGTTTTTGCATCTTTTTTTTACTTCAATCTTTGGGTG
TATTTTTTGGATGTTGATGTGTGAATTGTGGTGCAAA