PGML0638, PGML0638 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0638
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TA)10
Primer 1PGML0638_F: GCTAGCACACAATTACCCACG
Primer 2PGML0638_R: TCGGATCACATCACTCCTCA
Product Length307
Publication[view all]
CommentBAC_ID=FITB2051.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A12chromosomeA12:81676332..81676626 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018213.1chromosomeCM018213.1:78623252..78623546 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:15892367..15892673 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_12chromosomeD10_12:38711783..38712123 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016625.1chromosomeCM016625.1:111502383..111502657 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold1107.1supercontigscaffold1107.1:356564..356858 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A12chromosomeA12:67848170..67848464 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A12chromosomeA12:87313844..87314138 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:81617779..81618073 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A12chromosomeGbar_A12:81069982..81070276 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A12chromosomeA12:80567367..80567661 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017621.1chromosomeCM017621.1:82638431..82638725 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:46677769..46678065 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017647.1chromosomeCM017647.1:85181029..85181327 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017699.1chromosomeCM017699.1:80974917..80975211 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A12chromosomeA12:87840086..87840380 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:87767015..87767309 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:95004713..95005008 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:41898583..41898889 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:68230966..68231262 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr08chromosomeChr08:42170386..42170684 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:32452680..32452972 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr08chromosomeChr08:43265623..43265929 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:29651353..29651673 +Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:28575670..28575994 +Gossypium lobatum (D7) genome ISU_v1n/a
Sequence
>PGML0638 ID=PGML0638; Name=PGML0638; organism=Gossypium raimondii; type=genetic_marker; length=307bp
GCTAGCACACAATTACCCACGATTGTTTTGCACAAAACAAGCTTTCTTTT
GAGCTTGTCCATCTATTTTGTAATACCCCTCACTCGATCCGAGTAAGAGA
TGCTACATTTAAACACTAAATTCATCACTTAAACATATTCTTGTTTCATT
ATAATCAAGGTAATTTATAGTACAAAACATTATCATTTACACATAATTCA
CAATTTTTTTAAGTACATGCCAAACTAAAATCTAATGTGTGTGTGTATAT
ATATATATATATATACCAAAGGCTTGAACTTGAAGCTTGAGGAGTGATGT
GATCCGA