PGML0636, PGML0636 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0636
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TATAT)5
Primer 1PGML0636_F: AGGAGGTTACTGGCCACCTT
Primer 2PGML0636_R: TAGACATGGGTTCAAGGCCA
Product Length220
Publication[view all]
CommentBAC_ID=FITB1954.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:39680135..39680360 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:36231926..36232147 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:34738179..34738405 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
CM016619.1chromosomeCM016619.1:69784993..69785204 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr10chromosomeDt_chr10:56231059..56231284 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:36917433..36917658 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:39250295..39250520 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:38690991..38691216 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:35985002..35985227 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:35721108..35721329 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:36618867..36619088 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:37143724..37143940 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:38233349..38233590 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:36886255..36886476 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:39104444..39104669 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:34596664..34596890 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:36840686..36840892 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr10chromosomeChr10:38060604..38060825 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:24545851..24546062 +Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:25036521..25036742 +Gossypium lobatum (D7) genome ISU_v1n/a
E06chromosomeE06:52920319..52920513 +Gossypium stocksii (E1) genome NSF_v1n/a
F06chromosomeF06:44171121..44171332 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr06chromosomeChr06:46446918..46447129 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0636 ID=PGML0636; Name=PGML0636; organism=Gossypium raimondii; type=genetic_marker; length=220bp
AGGAGGTTACTGGCCACCTTGTCTCATAAACTAACTTGTATGTGGCTAAT
AAATCATGTTTTTATACGTTTTATATTATAATATTATATTATATTATATC
AGTATACATTTTGTAAATGAAACACGGAAAAGGGACGGAAAAGAAAATAG
GTAAACATATATTTAAGGAAACTAATAGTTCTGGATAACAAGTCATGTCA
TGGCCTTGAACCCATGTCTA