PGML0633, PGML0633 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0633
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(GAAAA)3
Primer 1PGML0633_F: AAAGAAACAGAGGGAGCAAATC
Primer 2PGML0633_R: GTTTGGTTGGGTGTATTGGC
Product Length376
Publication[view all]
CommentBAC_ID=FITB6296.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:24539633..24540300 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D08chromosomeD08:11844107..11844449 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:23473042..23473670 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_12chromosomeD10_12:7636214..7636557 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_07chromosomeD10_07:31067075..31067416 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr4chromosomeDt_chr4:21036274..21036616 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr2chromosomeDt_chr2:35057572..35058026 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:22701838..22702505 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D08chromosomeD08:11229717..11230059 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:24044172..24044839 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D08chromosomeGhir_D08:11260009..11260351 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:23441282..23441949 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:10857275..10857617 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:23614579..23615246 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:10705530..10705872 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:23955686..23956353 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D08chromosomeD08:11344013..11344355 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:38878329..38878672 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D01chromosomeGbar_D01:24078402..24079030 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:23783559..23784227 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:11471630..11471973 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:24934713..24935381 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017654.1chromosomeCM017654.1:8539416..8539759 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D01chromosomeD01:24345575..24346242 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D08chromosomeD08:11416785..11417127 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:10694929..10695303 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr06chromosomeChr06:24305318..24305696 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:12195670..12196048 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Sequence
>PGML0633 ID=PGML0633; Name=PGML0633; organism=Gossypium raimondii; type=genetic_marker; length=376bp
AAAGAAACAGAGGGAGCAAATCTGCAGAAAAGAAAAGAAAATAAACTGAG
AGCAAAATCGGCAGAAAAAAAATAAACTGGGAGCAAATCGGCAGAAAAGA
AAAGAAAAGAAACAAGGGAGCAAATCGGCTGAAGCTAAAAGGAACAGAAG
AGAAACAAAGGGGATCGGGGGAGGGTAAAACAGGGAGGGTAAACTGAAGC
GGCAACTAATCTGGGCAAAAGAGAGGGATTAGAAATCGGTGGTTTTTACC
GATTAGGAAAGTAATGTATTACACGCATATTAGCAATACATTTAACCAAG
ACGACGGAATAAAGAGGGATTAGGTGGGGCCCACCGATTAGGGGTGTATT
GGCTATGCCAATACACCCAACCAAAC