PGML0631, PGML0631 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0631
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TTAT)3
Primer 1PGML0631_F: AACATACGGAGGCTGGTCAC
Primer 2PGML0631_R: TAATGAACCAAATTTGCCCG
Product Length287
Publication[view all]
CommentBAC_ID=FITB6224.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:5474812..5475088 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D02chromosomeD02:7720515..7720783 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D12chromosomeD12:54687827..54688113 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:4792987..4793264 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018226.1chromosomeCM018226.1:51454254..51454540 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:4458956..4459234 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_12chromosomeD5_12:8352970..8353255 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
scaffold5605.1supercontigscaffold5605.1:6089..6365 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr8chromosomeDt_chr8:47629778..47630054 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr5chromosomeDt_chr5:6105929..6106197 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:7525568..7525836 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D12chromosomeD12:51062249..51062535 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:4838470..4838745 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D02chromosomeGhir_D02:7320455..7320723 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D12chromosomeGhir_D12:53922674..53922960 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:4828695..4828971 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:7024999..7025267 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:52753236..52753522 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:5048918..5049194 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:7362057..7362325 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:53554156..53554442 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:4733718..4733994 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D02chromosomeD02:7304715..7304983 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D12chromosomeD12:51775187..51775473 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:4542447..4542724 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D12chromosomeGbar_D12:50785573..50785859 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:4555616..4555893 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D12chromosomeD12:51906012..51906298 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:7743846..7744132 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017634.1chromosomeCM017634.1:51871674..51871960 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:5125254..5125531 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017650.1chromosomeCM017650.1:8015244..8015530 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017660.1chromosomeCM017660.1:54719264..54719550 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:4782732..4783009 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017712.1chromosomeCM017712.1:52544348..52544634 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:5169529..5169805 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D02chromosomeD02:7571502..7571770 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D12chromosomeD12:53993891..53994177 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:4476410..4476688 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr12chromosomeChr12:49431253..49431539 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr12chromosomeChr12:47178968..47179247 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Sequence
>PGML0631 ID=PGML0631; Name=PGML0631; organism=Gossypium raimondii; type=genetic_marker; length=287bp
AACATACGGAGGCTGGTCACGTGCGGACGAGAGGAGCTCCTGCGACGTTG
GGGTTTGCCCTAGGATTGCTCTGTATTTTTCTTGTTGGGCCGCTTCGTCA
TTGGGCTAGGGTTTTAGAAATTTAGGTTGGGTCTGGGTTGAATTTGGGTT
GTGATATTGGGCTTAGTGGGTCTGATGTATTTTGGGTTTGTAATGTGGAC
TGATAGACTTTTAAAATTTTTTGTTTTCATTTATATTTTTGTTTATTTAT
TTATTTCTGATTTGGGCCGGGCAAATTTGGTTCATTA