PGML0630, PGML0630 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0630
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(CAAA)4
Primer 1PGML0630_F: CGAGCCAAGATCCTCTGAAT
Primer 2PGML0630_R: TGAGGTGTGTAGCGGAGTTG
Product Length327
Publication[view all]
CommentBAC_ID=FITB6352.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:26952981..26953307 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018218.1chromosomeCM018218.1:27439426..27439752 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:26241592..26241918 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_04chromosomeD10_04:26281954..26282280 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr12chromosomeDt_chr12:12636414..12636740 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:23967015..23967341 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:31704294..31704620 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:32939860..32940186 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:32132146..32132472 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:29924682..29925008 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D04chromosomeGbar_D04:25668631..25668957 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:33531291..33531617 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:28319166..28319492 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:29402736..29403062 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:28011494..28011820 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:30819778..30820104 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:26213680..26214006 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_02chromosomeB_02:34954620..34954944 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr12chromosomeChr12:25353324..25353650 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:42106453..42106779 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:40941996..40942322 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr12chromosomeChr12:27237584..27237910 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:37810284..37810614 +Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:32673568..32673894 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:40273171..40273505 +Gossypium lobatum (D7) genome ISU_v1n/a
E04chromosomeE04:50257642..50257969 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr04chromosomeChr04:107703009..107703335 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr04chromosomeChr04:107701577..107701902 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0630 ID=PGML0630; Name=PGML0630; organism=Gossypium raimondii; type=genetic_marker; length=327bp
CGAGCCAAGATCCTCTGAATGTCATGTTCGTGTCCTAACTTTGCAGGTTA
TCGGTGAAGATGGAAATAAAATAGGAGTGAACTATGAAGCACAGTGTGAG
TTCAGTCACAAGAAAACCGTAACAAAAGAACAAACAAACAAACAAAGCAC
ACGGGTTAGCAATTATAAGATTAAACACAACCATAAAGCACCTCAGATTA
ACGGTTTTCCACATAAAACACTTCACTTTACTATCTCGGTATTCACAATT
TTATATGCACGTGCATATGAATGCAATATAGTTTTAGATTAATAGAAAAG
TCCTACCCAACTCCGCTACACACCTCA