PGML0621, PGML0621 (genetic_marker) Gossypium raimondii

Marker Overview


Name	PGML0621
Genbank ID	N/A
Type	SSR
Species	Gossypium raimondii
Repeat Motif	(TA)28,(TAAT)7
Primer 1	PGML0621_F: CTTAATTGGTGCCGAATGCT
Primer 2	PGML0621_R: TGAAGATGAAGATGGTTTCCC
Product Length	254
Publication	[view all]
Comment	BAC_ID=FITB7128.x2

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
D5_07	chromosome	D5_07:45416502..45416750 +	Gossypium raimondii (D5) 'D5-4' genome NSF_v1	n/a
Chr07_CRI-A2_v1.0.a1	chromosome	Chr07_CRI-A2_v1.0.a1:89873057..89873267 +	Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1	n/a
D10_07	chromosome	D10_07:7036264..7036480 -	Gossypium turneri (D10) genome NSF_v1_a2	n/a
Chr07	chromosome	Chr07:94177717..94177927 +	Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1	n/a
Chr07	chromosome	Chr07:6886624..6886868 -	Gossypium raimondii (D5) 'Grai D502' genome HAU_v1	n/a
Chr01	chromosome	Chr01:49104837..49105047 +	Gossypium thurberi (D1-5) genome CRI_v1	n/a
Chr_01	chromosome	Chr_01:32473043..32473261 +	Gossypium harknessii (D2-2) genome ISU_v1	n/a
Chr01	chromosome	Chr01:48750405..48750653 +	Gossypium davidsonii (D3d-8) genome CRI_v1	n/a
Chr01	chromosome	Chr01:34345901..34346105 +	Gossypium aridum (D4) genome ISU_v1	n/a

Publications


Year	Publication
2015	Tang S, Teng Z, Zhai T, Fang X, Liu F, Liu D, Zhang J, Liu D, Wang S, Zhang K, Shao Q. Construction of genetic map and QTL analysis of fiber quality traits for Upland cotton (Gossypium hirsutum L.). Euphytica. 2015 Jan 1;201(2):195-213.

Sequence

>PGML0621 ID=PGML0621; Name=PGML0621; organism=Gossypium raimondii; type=genetic_marker; length=254bp
CTTAATTGGTGCCGAATGCTAGATAAGAAACTTGAAGTTTTTCTTTTCTT
TAATGACTTGGATGACATAAACGAATGAAAACGATGATGTTTCTCTTACC
TTCCACTTATATATATATATATATATATATATATATATATATATATATAT
ATATATATATATACTGTTTTAATTAATTAATTAATTAATTAATTAATGAC
ATATACACACTGTTAATTATAAATTCAGTTAAGGGGAAACCATCTTCATC
TTCA

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PGML0621, PGML0621 (genetic_marker) Gossypium raimondii