PGML0597, PGML0597 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0597
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(T)15
Primer 1PGML0597_F: TTGTCGGATAATTACTTCCTCTCA
Primer 2PGML0597_R: AATGAACAATTGCAGTGCCC
Product Length227
Publication[view all]
CommentBAC_ID=FITB7025.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:56981116..56981338 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D05chromosomeD05:57823930..57824154 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D05chromosomeD05:57951197..57951417 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:56054348..56054572 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018219.1chromosomeCM018219.1:57077529..57077753 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018219.1chromosomeCM018219.1:57209937..57210157 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM016618.1chromosomeCM016618.1:9565074..9565312 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:5212251..5212471 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr9chromosomeDt_chr9:6191380..6191602 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:54678393..54678615 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold3998_D05supercontigscaffold3998_D05:23381..23605 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D05chromosomeD05:55635497..55635717 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:55868848..55869070 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D05chromosomeGhir_D05:56705882..56706106 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D05chromosomeGhir_D05:56833039..56833259 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:56805361..56805583 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:57553044..57553268 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:57684049..57684269 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:56531222..56531444 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:57369420..57369644 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:57496669..57496889 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:56125187..56125409 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D05chromosomeD05:56537671..56537895 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D05chromosomeD05:56664937..56665157 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:56041344..56041568 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D05chromosomeGbar_D05:57138544..57138768 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D05chromosomeGbar_D05:57270942..57271162 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:58746389..58746613 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
scaffold4805_obj_D05supercontigscaffold4805_obj_D05:9195..9419 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:55813538..55813758 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017627.1chromosomeCM017627.1:56784587..56784807 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:57958750..57958970 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017653.1chromosomeCM017653.1:59027097..59027321 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:56724027..56724249 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017705.1chromosomeCM017705.1:57917159..57917380 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:58868037..58868258 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D05chromosomeD05:59732306..59732530 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D05chromosomeD05:59859571..59859791 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:89426575..89426822 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:51309500..51309721 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:52359024..52359244 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Sequence
>PGML0597 ID=PGML0597; Name=PGML0597; organism=Gossypium raimondii; type=genetic_marker; length=227bp
TTGTCGGATAATTACTTCCTCTCATCTTAAATAAAAAAAAAATCATTATC
TCCAGTTTTTTTTTTTTTTTCATTTAGTTTAAATCATTCTCTGTTTTTCA
AAAATCTGAGGTAAAATCAGATCTTACATGTGTCGTGGACGAGAACTATT
TGGTTGTATTTTTCTTATAAAAATTGTGGTAATTTACAAATATTTAGAAT
TGTGTTGGGGCACTGCAATTGTTCATT